PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05010.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 17799.8 Da PI: 6.5082 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H Zmw_sc05010.1.g00090.1.sm.mk 88 HQCAVCGLEFSMGQALGGHMRRH 110 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.57E-5 | 41 | 68 | No hit | No description |
Pfam | PF13912 | 3.1E-10 | 43 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.19E-6 | 86 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-5 | 86 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.44 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.154 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-10 | 88 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MTPARQEAEE SKEMEGLRAN ADALLSLSSS SSSSRKAMAA EGVFECKTCR RRFPSFQALG 60 GHSTSHTRLQ ARTLGDHPPQ RDGRARMHQC AVCGLEFSMG QALGGHMRRH RGEAPPAVAA 120 RQQEEEAMPD LNFPLLEEDG GGSGGRTDQE PSSSGDQPQL LNLLV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817787.1 | 2e-61 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2S3HQN8 | 5e-60 | A0A2S3HQN8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DEP5 | 5e-60 | A0A2T7DEP5_9POAL; Uncharacterized protein | ||||
STRING | BRADI2G54500.1 | 2e-53 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |