PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04989.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 496aa MW: 53622.5 Da PI: 9.527

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04989.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.5	6.3e-56	144	239	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 r qdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekr+t+ngddllwa++tlGfedyv+p Zmw_sc04989.1.g00010.1.am.mk 144 RGQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRRTVNGDDLLWAMTTLGFEDYVDP 224 679**************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 lk+yl+++releg+k Zmw_sc04989.1.g00010.1.am.mk 225 LKLYLRRFRELEGDK 239 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-50	141	250	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-37	146	243	IPR009072	Histone-fold
Pfam	PF00808	1.2E-26	149	213	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	8.6E-18	177	195	No hit	No description
PROSITE pattern	PS00685	0	180	196	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	8.6E-18	196	214	No hit	No description
PRINTS	PR00615	8.6E-18	215	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MYRATPRRDP LSKQTTDKSD SHLTSHSYVA TFRDQPWPTR THLAPQTYRR TNGAPRDTSL 60 ARCILIPTIQ PTDAAATLPS SLSSQLPLVA LLPPPFPSLP FPILQHLNEG RKGRARGVCS 120 VPAAMPDSDN ESGWPSTADV SSARGQDRFL PIANVSRIMK KALPANAKIS KDAKETVQEC 180 VSEFISFITG EASDKCQREK RRTVNGDDLL WAMTTLGFED YVDPLKLYLR RFRELEGDKV 240 ATGVASSGSG SGSGPLQSKA DTPSSAHNGA GSAVGYGMYG GGSGVMMMVG QPMYGSPPAG 300 YPQPPHHQAV MGARGAYGHG GASPSGLGRQ DRGRSLHRSV MHDFATVIAL AASGKRARKC 360 VEDHLNFAEK ERGHETLALG HLFATTATSG GAKPTESTWT ATAGQHHEIE FHISDLMLCD 420 GGLVAVGANT EPCVPPNRRL TFAFAARWRC RETTCVTVGR RAFQGQRGWR EATCTLAERR 480 NALVWCVRSG RWSEEK

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MYRATPRRDP LSKQTTDKSD SHLTSHSYVA TFRDQPWPTR THLAPQTYRR TNGAPRDTSL  60
ARCILIPTIQ PTDAAATLPS SLSSQLPLVA LLPPPFPSLP FPILQHLNEG RKGRARGVCS  120
VPAAMPDSDN ESGWPSTADV SSARGQDRFL PIANVSRIMK KALPANAKIS KDAKETVQEC  180
VSEFISFITG EASDKCQREK RRTVNGDDLL WAMTTLGFED YVDPLKLYLR RFRELEGDKV  240
ATGVASSGSG SGSGPLQSKA DTPSSAHNGA GSAVGYGMYG GGSGVMMMVG QPMYGSPPAG  300
YPQPPHHQAV MGARGAYGHG GASPSGLGRQ DRGRSLHRSV MHDFATVIAL AASGKRARKC  360
VEDHLNFAEK ERGHETLALG HLFATTATSG GAKPTESTWT ATAGQHHEIE FHISDLMLCD  420
GGLVAVGANT EPCVPPNRRL TFAFAARWRC RETTCVTVGR RAFQGQRGWR EATCTLAERR  480
NALVWCVRSG RWSEEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	7e-43	142	234	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331