PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04974.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 412aa MW: 46299.9 Da PI: 6.9605

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04974.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.5e-34	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Zmw_sc04974.1.g00010.1.es.mkhc 43 KPRLKWTPELHQRFVDAVNQLGGADKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.815	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-32	41	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-10	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-20	145	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MYPQHQGPSE LFTRTSFPME QQLFLRGGNS QGDSGLVLST DAKPRLKWTP ELHQRFVDAV 60 NQLGGADKAT PKTVMRLMGI PGLTLYHLKS HLQKYRLSKN LQAQANVGAT KNAIGCTPVT 120 DRIPGTSVPT MSSTSVIPQA EKTIPIGEAL QMQIEVQRQL NEQLEVQRHL QLQIKAQGKY 180 LQAVLEQAQE TLGQQNLGPA NLEDAKIKIS ELVSQVSNEC FSNATTDIKE NSNILRLEPQ 240 QIQFIESSTN TNLTEAEGFV KEHRLQNHGV LKAYDDRSLF CRKGSHENED RLTLNRSLSE 300 RRLAHLHNVK VYDKLEFVCG SEKEAPAEYI TPQKDSGGST ISSALGSKEG QAVKQSLEEQ 360 NYRKQAVEYQ RESKLLDFEN PYSGKKLDLN THNIDDNDQP YRHFDLNGFS WS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MYPQHQGPSE LFTRTSFPME QQLFLRGGNS QGDSGLVLST DAKPRLKWTP ELHQRFVDAV  60
NQLGGADKAT PKTVMRLMGI PGLTLYHLKS HLQKYRLSKN LQAQANVGAT KNAIGCTPVT  120
DRIPGTSVPT MSSTSVIPQA EKTIPIGEAL QMQIEVQRQL NEQLEVQRHL QLQIKAQGKY  180
LQAVLEQAQE TLGQQNLGPA NLEDAKIKIS ELVSQVSNEC FSNATTDIKE NSNILRLEPQ  240
QIQFIESSTN TNLTEAEGFV KEHRLQNHGV LKAYDDRSLF CRKGSHENED RLTLNRSLSE  300
RRLAHLHNVK VYDKLEFVCG SEKEAPAEYI TPQKDSGGST ISSALGSKEG QAVKQSLEEQ  360
NYRKQAVEYQ RESKLLDFEN PYSGKKLDLN THNIDDNDQP YRHFDLNGFS WS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441286.2	0.0	myb-related protein 2
Refseq	XP_021303324.1	0.0	myb-related protein 2
TrEMBL	A0A1B6P922	0.0	A0A1B6P922_SORBI; Uncharacterized protein
STRING	Pavir.J02359.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37