PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04953.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 332aa MW: 35252.3 Da PI: 6.0882 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.8 | 1.4e-27 | 4 | 112 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.....peeeredamsslvyeAearard 71 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a + r+++++sl+yeA+ r+ + Zmw_sc04953.1.g00040.1.sm.mk 4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgggagADGLRPAVFRSLLYEACGRIVN 84 6**************************************************996666556677****************** PP DUF260 72 PvyGavgvilklqqqleqlkaelallke 99 PvyG+vg+++++q+q +q+++e++l +e Zmw_sc04953.1.g00040.1.sm.mk 85 PVYGSVGLLWSGQWQACQAAVEAVLKGE 112 **********************998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.52 | 3 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-22 | 4 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAPGGG 60 AGADGLRPAV FRSLLYEACG RIVNPVYGSV GLLWSGQWQA CQAAVEAVLK GEPLVRVASA 120 AAVDQPEAAA SPPLGTRAAC DIRHVVKDRD AAAAADLLRV SRAGRTKFKR AATSSTTSRA 180 KAKTTTTTKP DNGRASPRPG TPTQEQEELV VVAGSGDELD DAHAPTSHHD HEESAGSHQH 240 LSDRDRAAAQ EGSSEDTEAE AGSHVSQAEE HHSYVHASLH DEEDEDEDEE VGLELTLGLE 300 PVVLRQPRSP SCNLRRLSTV SSLMATRLEL PA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310953.1 | 1e-107 | LOB domain-containing protein 42-like | ||||
TrEMBL | I1IL92 | 1e-106 | I1IL92_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16740.1 | 1e-107 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |