PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04937.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 534aa    MW: 57561.3 Da    PI: 9.881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04937.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.91.1e-29230324189
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g
  Zmw_sc04937.1.g00050.1.am.mk 230 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 310
                                   89***************************955556888******************************************* PP

                                   -EEEEEE-.SS.SE CS
                            B3  78 DfvvFkld.gr.se 89 
                                   D+v F +  g+  +
  Zmw_sc04937.1.g00050.1.am.mk 311 DTVSFGRGaGEaAR 324
                                   *****955344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-40220334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-28227318IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-25228315No hitNo description
SMARTSM010191.1E-20230335IPR003340B3 DNA binding domain
PfamPF023621.0E-26230333IPR003340B3 DNA binding domain
PROSITE profilePS5086313.846230335IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSGQEERNKA KPGIRITERS PEFACCCAET FPAPHRRRLL YAIGSAWPVA FQESSRAVPP  60
SASPRVGAQA AFPQLARSLY PSKQMNPPLA DPRIQQASEQ PSQSQPAARS LTASHRTDAA  120
AEAHDPPKER RGKGSRRRPK AAPRREDEEE GQEREEEGDD EASPREIPFM TAAASSSAPS  180
ASASAASASG SALRSSDGAG ASGRGGGGGG GDGGGNDDDD VEVIEKEHMF DKVVTPSDVG  240
KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR  300
FVKEKRLDAG DTVSFGRGAG EAARDRLFID WKRRADVVRD PHWMPRIPLP VPSAASPYGP  360
WGGGAGGFFM PTSPPATLYE HHRLRQSLDF RDVNAAAPAR QLLFFGSAGM PPPGPMLPPP  420
PPPPPMHITV QPSPTVTAGL PMVLDSVSLV NSPTAASKRV RLFGVNLDNP HPGRGESSHD  480
ANALSRRMPG WQRPSPLRLF ELPHHQRNVA GEARVESSAA SSPSSSSSSK REAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-602253343113B3 domain-containing transcription factor NGA1
5os9_B4e-602253343113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976592.11e-156B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-122Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A1E5V6G81e-162A0A1E5V6G8_9POAL; B3 domain-containing protein
STRINGSi011823m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]