PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04928.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 1158aa    MW: 123305 Da    PI: 11.583
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04928.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.9e-1710571091135
                          GATA    1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35  
                                    C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Zmw_sc04928.1.g00010.1.am.mk 1057 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 1091
                                    *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-1610511101IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.22710551087IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-1310551115No hitNo description
Gene3DG3DSA:3.30.50.107.7E-1310551089IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.05E-1110561103No hitNo description
PROSITE patternPS00344010571082IPR000679Zinc finger, GATA-type
PfamPF003204.7E-1510571091IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1158 aa     Download sequence    Send to blast
MSMSLVGVGA VKFSTGAASA WFGAPTEVAD SSNGGEALQP SARLAAGSSR CAAQASRFVT  60
KCQRLATMRV EFGRVAGGGG GGPRHSLLVR AKQEDRTKPT RRGEPGSPGR WPRDGGPATG  120
ASSRPDDAGA RAVSHSSPRS RRDIASIRLC FAAVRADVVR YPGSAASDGA RRQGGGMARC  180
PAANRHVSGY GRGPCESNRH VMPSRAVSET RKRRALRLLS SRRVPPPSVA SSPPATTHAP  240
PIKTHNKGLL GAGSRVRSPG EVSNRHRARP SAVTARDPEA QQQQVRPGRP CGKDGTAGAR  300
DHVHHRGGGG AAGGSRELRN KRARLGTCRG DSGPPPPTRS PRDPRRAHVI RCRATGAHET  360
TTHARDWTGV HEHAASCHVL LRPPAPVVSA LRRRVRPPAR PPTDIRPRVP VRNAYGWVEW  420
VVTGKLARSG PRDRTRASRS PEHDGGMDQG RRRTGGREGN GHRGVHVSDT RLLRGSVQAV  480
SVRGIFRRVR SVVTPSLAVA AAPVSSCVCT IYGHYAANKS IRTLEYFFFL AGCTTDYRHR  540
LFQRVLRFYF AADVLDRPWL AAGKEAMRPA RPQCPCLGVL LRKKGKKREA GVVEKKVNAR  600
WRGQEVPRAP ALHVALTSAQ PPFTCGNYHR PFHCQQKQTA AAGNQIHRRL APPHRAPKQH  660
ADVGAREQSG RGTRLCSVPA RKKKDSSMDP APRARTLSPS QTRTPDCGAH GNGRRRDALN  720
CARRERQRRA RGRAANEGRA PPRNGSRFLR TPGGEEREGQ KSTGRLTILG AWAWQTIPPP  780
CPCVRTTPGP ASCPRMASEW EMAAMGVDLG MGMSAYHHHH HNASGITTAP MSSHHGGGGG  840
GYSTAHHHYY GMAPVGDAMR VDDLLDLSNA GAHEFFPTAA AAATENGHHS GAMCEPSPKG  900
NSSDHQTSFP SFADEFYIPS EEAAELEWLS KFVDDSYSDI PNYSSAAHAA MAAAAAGNGG  960
GNSTGQDGCV TAAPGRGARS KRSRAAAVAA AAWHSLMPRP PAQSSPSSSC SSSDLPSSKP  1020
GRPNGSNGSR GSKKDPGPGG AAAAGEAGLE GGGVRRCTHC ASEKTPQWRT GPLGPKTLCN  1080
ACGVRFKSGR LVPEYRPAAS PTFLLTQHSN SHRKVMELRR QKELLMIRGS HRDATAAAAA  1140
AGTAGPRPDL MFRDYGVC
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955