PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04928.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 1158aa MW: 123305 Da PI: 11.583 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.7 | 2.9e-17 | 1057 | 1091 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l Zmw_sc04928.1.g00010.1.am.mk 1057 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 1091 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.5E-16 | 1051 | 1101 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.227 | 1055 | 1087 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.37E-13 | 1055 | 1115 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.7E-13 | 1055 | 1089 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.05E-11 | 1056 | 1103 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 1057 | 1082 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-15 | 1057 | 1091 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1158 aa Download sequence Send to blast |
MSMSLVGVGA VKFSTGAASA WFGAPTEVAD SSNGGEALQP SARLAAGSSR CAAQASRFVT 60 KCQRLATMRV EFGRVAGGGG GGPRHSLLVR AKQEDRTKPT RRGEPGSPGR WPRDGGPATG 120 ASSRPDDAGA RAVSHSSPRS RRDIASIRLC FAAVRADVVR YPGSAASDGA RRQGGGMARC 180 PAANRHVSGY GRGPCESNRH VMPSRAVSET RKRRALRLLS SRRVPPPSVA SSPPATTHAP 240 PIKTHNKGLL GAGSRVRSPG EVSNRHRARP SAVTARDPEA QQQQVRPGRP CGKDGTAGAR 300 DHVHHRGGGG AAGGSRELRN KRARLGTCRG DSGPPPPTRS PRDPRRAHVI RCRATGAHET 360 TTHARDWTGV HEHAASCHVL LRPPAPVVSA LRRRVRPPAR PPTDIRPRVP VRNAYGWVEW 420 VVTGKLARSG PRDRTRASRS PEHDGGMDQG RRRTGGREGN GHRGVHVSDT RLLRGSVQAV 480 SVRGIFRRVR SVVTPSLAVA AAPVSSCVCT IYGHYAANKS IRTLEYFFFL AGCTTDYRHR 540 LFQRVLRFYF AADVLDRPWL AAGKEAMRPA RPQCPCLGVL LRKKGKKREA GVVEKKVNAR 600 WRGQEVPRAP ALHVALTSAQ PPFTCGNYHR PFHCQQKQTA AAGNQIHRRL APPHRAPKQH 660 ADVGAREQSG RGTRLCSVPA RKKKDSSMDP APRARTLSPS QTRTPDCGAH GNGRRRDALN 720 CARRERQRRA RGRAANEGRA PPRNGSRFLR TPGGEEREGQ KSTGRLTILG AWAWQTIPPP 780 CPCVRTTPGP ASCPRMASEW EMAAMGVDLG MGMSAYHHHH HNASGITTAP MSSHHGGGGG 840 GYSTAHHHYY GMAPVGDAMR VDDLLDLSNA GAHEFFPTAA AAATENGHHS GAMCEPSPKG 900 NSSDHQTSFP SFADEFYIPS EEAAELEWLS KFVDDSYSDI PNYSSAAHAA MAAAAAGNGG 960 GNSTGQDGCV TAAPGRGARS KRSRAAAVAA AAWHSLMPRP PAQSSPSSSC SSSDLPSSKP 1020 GRPNGSNGSR GSKKDPGPGG AAAAGEAGLE GGGVRRCTHC ASEKTPQWRT GPLGPKTLCN 1080 ACGVRFKSGR LVPEYRPAAS PTFLLTQHSN SHRKVMELRR QKELLMIRGS HRDATAAAAA 1140 AGTAGPRPDL MFRDYGVC |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |