PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04924.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 389aa MW: 42017.2 Da PI: 7.7072

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04924.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.1	1.8e-49	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGf+F P+deelv++yL+kkv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nra+k+g Zmw_sc04924.1.g00010.1.am.mk 10 LPPGFKFFPSDEELVCHYLHKKVANERIAQ-GTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRAAKTG 89 79***********************998.88***********77777889********************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev s ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl Zmw_sc04924.1.g00010.1.am.mk 90 YWKATGKDREVRSPaTRAVVGMRKTLVFYHGRAPNGVKSGWVMHEFRL 137 *********977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-58	7	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.298	10	156	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MALREIESTL PPGFKFFPSD EELVCHYLHK KVANERIAQG TLVEVDLHAR EPWELPDVAK 60 LTASEWYFFS FRDRKYATGS RTNRAAKTGY WKATGKDREV RSPATRAVVG MRKTLVFYHG 120 RAPNGVKSGW VMHEFRLDTP CSSPREDWVL CRVFEKTKGD GAADGHDSAS GASSSPTLTG 180 SSSHVDAPVR QEHHAPCGGY NGAGFAPQQE VAVLLPCYGS YGPPAVDRHG FPQDDAEGAL 240 PAGFEFGARE VAGDEYGFGY FDMAGFEYKL EPATYGLLAA VQRCRQRVTA WCGTPSSPPA 300 AYTCARPLAA GVKPPPPAVL TVPYEEPEPT PAAACSGCTW GLGNAVARSS SPVTDTKDGG 360 PREAAAALGQ AHRRSNAPRV LKHRAICFL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MALREIESTL PPGFKFFPSD EELVCHYLHK KVANERIAQG TLVEVDLHAR EPWELPDVAK  60
LTASEWYFFS FRDRKYATGS RTNRAAKTGY WKATGKDREV RSPATRAVVG MRKTLVFYHG  120
RAPNGVKSGW VMHEFRLDTP CSSPREDWVL CRVFEKTKGD GAADGHDSAS GASSSPTLTG  180
SSSHVDAPVR QEHHAPCGGY NGAGFAPQQE VAVLLPCYGS YGPPAVDRHG FPQDDAEGAL  240
PAGFEFGARE VAGDEYGFGY FDMAGFEYKL EPATYGLLAA VQRCRQRVTA WCGTPSSPPA  300
AYTCARPLAA GVKPPPPAVL TVPYEEPEPT PAAACSGCTW GLGNAVARSS SPVTDTKDGG  360
PREAAAALGQ AHRRSNAPRV LKHRAICFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	7	156	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	7	156	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	7	156	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	7	156	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	7	156	17	168	NAC domain-containing protein 19
3swm_B	1e-48	7	156	17	168	NAC domain-containing protein 19
3swm_C	1e-48	7	156	17	168	NAC domain-containing protein 19
3swm_D	1e-48	7	156	17	168	NAC domain-containing protein 19
3swp_A	1e-48	7	156	17	168	NAC domain-containing protein 19
3swp_B	1e-48	7	156	17	168	NAC domain-containing protein 19
3swp_C	1e-48	7	156	17	168	NAC domain-containing protein 19
3swp_D	1e-48	7	156	17	168	NAC domain-containing protein 19
4dul_A	1e-48	7	156	14	165	NAC domain-containing protein 19
4dul_B	1e-48	7	156	14	165	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953145.1	1e-117	NAC domain-containing protein 79
Swissprot	Q9FLR3	2e-58	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	K3YUQ5	1e-116	K3YUQ5_SETIT; Uncharacterized protein
STRING	Si018001m	1e-117	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]