PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04921.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 500aa MW: 55395.1 Da PI: 8.549

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04921.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.1	6.7e-19	273	363	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fY +YA++ GF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ + +r gC+a +++ ++++++w+v+k Zmw_sc04921.1.g00010.1.am.mk 273 FYYSYASREGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVHALDPSRNGCDALFEIVRKDKDVWMVSK 352 9*****************9.6777**********9999995455556677789****************** PP FAR1 81 leleHnHelap 91 l leH+Hel+p Zmw_sc04921.1.g00010.1.am.mk 353 LILEHTHELNP 363 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-16	273	363	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
LLKIDDATSV ARHQIFARPL PSLVKRRCRL LSSFSSHSSA LLLSLDCRPA SRGSSVCTTP 60 WISAVTLGTK ALCLDETSSI LATTFERGSF AGGDASQACG TSSGFRFPVP VPRLVAEQGM 120 MEPQATELED DSINFWASLG VSPTVDQMPL HGVQVVEHQS QPLLAAAAAA AAAQSQSQSV 180 CKDLFPVESE SCLEPQLGME FDSGEAAKTF YIAYAGRVLR RGDNKWVVTK LVKEHNHEVG 240 LPSRVHYIAI ETDAVIDPYV GMEFESLESA KTFYYSYASR EGFEARVRQS RKSQDESLKM 300 LKLVCSRHRY HSGRENNGED TKRVHALDPS RNGCDALFEI VRKDKDVWMV SKLILEHTHE 360 LNPEPDSRVR CVRSQDRKQP MHTGTIRDLL KKHAGTINML TTVASDLGTE MKREEGWTHF 420 PPKHGGCIRL SSQSIIILGG SFQSQADVSQ QRFLSAHVSI RLISPTKALA RRPMISPRRR 480 DRGRMCVVAG VKLVAERIEH

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

LLKIDDATSV ARHQIFARPL PSLVKRRCRL LSSFSSHSSA LLLSLDCRPA SRGSSVCTTP  60
WISAVTLGTK ALCLDETSSI LATTFERGSF AGGDASQACG TSSGFRFPVP VPRLVAEQGM  120
MEPQATELED DSINFWASLG VSPTVDQMPL HGVQVVEHQS QPLLAAAAAA AAAQSQSQSV  180
CKDLFPVESE SCLEPQLGME FDSGEAAKTF YIAYAGRVLR RGDNKWVVTK LVKEHNHEVG  240
LPSRVHYIAI ETDAVIDPYV GMEFESLESA KTFYYSYASR EGFEARVRQS RKSQDESLKM  300
LKLVCSRHRY HSGRENNGED TKRVHALDPS RNGCDALFEI VRKDKDVWMV SKLILEHTHE  360
LNPEPDSRVR CVRSQDRKQP MHTGTIRDLL KKHAGTINML TTVASDLGTE MKREEGWTHF  420
PPKHGGCIRL SSQSIIILGG SFQSQADVSQ QRFLSAHVSI RLISPTKALA RRPMISPRRR  480
DRGRMCVVAG VKLVAERIEH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571445.2	1e-125	protein FAR1-RELATED SEQUENCE 5 isoform X12
Refseq	XP_024316751.1	1e-125	protein FAR1-RELATED SEQUENCE 5 isoform X8
TrEMBL	A0A0Q3F762	1e-124	A0A0Q3F762_BRADI; Uncharacterized protein
TrEMBL	A0A0Q3LRX4	1e-124	A0A0Q3LRX4_BRADI; Uncharacterized protein
STRING	OB08G14200.1	1e-123	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967