PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04917.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 413aa MW: 44036.1 Da PI: 8.0613 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 123 | 170 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +G+g+W+t++++ g++R++k+c++r+ +yl Zmw_sc04917.1.g00040.1.am.mk 123 KGLWTPEEDAKLLAFTSTHGTGNWTTVPQRAGLKRCGKSCRLRYTNYL 170 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.2e-17 | 178 | 219 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++ Zmw_sc04917.1.g00040.1.am.mk 178 NFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 219 89******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-23 | 114 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.011 | 118 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.64E-29 | 120 | 217 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 122 | 172 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 123 | 170 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.21E-10 | 126 | 170 | No hit | No description |
PROSITE profile | PS51294 | 25.003 | 171 | 225 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 175 | 225 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-15 | 175 | 223 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 178 | 219 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-12 | 178 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MAVPILEITA FRIPPLGSHP FNVVIVVAVA LLGVARGAVA VLNRGRGGHA FVARLHLPQH 60 VVTVRAFLLL LPLLIVGAAS ICTVTTTTTF PQRCGGLTGQ ARRRGRSPSM GRPPCCDKAS 120 VKKGLWTPEE DAKLLAFTST HGTGNWTTVP QRAGLKRCGK SCRLRYTNYL RPNLKHENFT 180 QEEEELIVTL HAMLGSRWSL IANQLPGRTD NDVKNYWNTK LSKKLRQRGI DPITHRPIAD 240 LMHSIGALAI RPPQPPQHPN TSAYLLPGSP PALPLVHDVA FHAAGLLPPH QQQQQQVLVD 300 VDTPESSQHG QIKWSDFLAD DATAEAQQVL GQQYHHEAVA PAGGVQASGS TAAGGGHNAC 360 TDYNAGGGGG GDDGAAAFID AILDCDKETG VDQLIAELLA DPAYYAGSSS SPD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 123 | 225 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150470.1 | 1e-145 | uncharacterized protein LOC100284100 | ||||
TrEMBL | B6TQ24 | 1e-144 | B6TQ24_MAIZE; DNA binding protein | ||||
STRING | GRMZM2G308034_P01 | 1e-144 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11874 | 34 | 39 |