PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04905.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 369aa    MW: 40835 Da    PI: 8.9209
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04905.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.9e-18257311256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++t+ q   Le+ F+ ++ +s++++ +LA+++gL+ rqV vWFqNrRa+ k
  Zmw_sc04905.1.g00030.1.am.mk 257 RKKLRLTSAQASLLEDSFRAHNILSHAQKHDLARRVGLSARQVEVWFQNRRARTK 311
                                   788899***********************************************98 PP
2HD-ZIP_I/II1093.2e-35257344188
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl++ q++lLE+sF++++ L++ +K++lar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+
  Zmw_sc04905.1.g00030.1.am.mk 257 RKKLRLTSAQASLLEDSFRAHNILSHAQKHDLARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDSLTDENARLR 337
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLr 88 
                                   ++ +e r
  Zmw_sc04905.1.g00030.1.am.mk 338 RDLAERR 344
                                   *988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.811253313IPR001356Homeobox domain
SMARTSM003891.1E-13255317IPR001356Homeobox domain
SuperFamilySSF466893.42E-17255322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-17257316IPR009057Homeodomain-like
CDDcd000862.33E-12257314No hitNo description
PfamPF000463.7E-15257311IPR001356Homeobox domain
PRINTSPR000314.4E-5284293IPR000047Helix-turn-helix motif
PROSITE patternPS000270288311IPR017970Homeobox, conserved site
PRINTSPR000314.4E-5293309IPR000047Helix-turn-helix motif
SMARTSM003406.0E-14313356IPR003106Leucine zipper, homeobox-associated
PfamPF021839.1E-7313340IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTMKKCPCEK RGPGAQEEQV YYSYVVAEPQ PCVNRLIPVY TCSTLHARQV SGGSIALEKK  60
KPLFHTYGSR SWKQPRSDDP YLPTPHTRTG LPRARAACLF SQHEQEQLAW SLDQEATEET  120
DPSFPSTLLL IETSQPAPAH PVHQQSTSLT TAGSSMEDCS AEYDTRLALE TSRPLPPQGH  180
ATVRLFGELI SPQDHGRGRA DRLEPTAPAV GRKKRADCGG VETATGGAGG RQNKRAIRTL  240
QVEDDGDRRS QSDGGSRKKL RLTSAQASLL EDSFRAHNIL SHAQKHDLAR RVGLSARQVE  300
VWFQNRRART KLKQTEVDCE LLRRWCDSLT DENARLRRDL AERRAAAAVS VVCPSCCNKK  360
MAVVAGDMA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255261SRKKLRL
2305313RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797072.12e-67putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX62e-45HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A1E5UWC52e-70A0A1E5UWC5_9POAL; Putative homeobox-leucine zipper protein HOX26
STRINGPavir.J13660.1.p4e-69(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249