PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04883.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 200aa MW: 20904.1 Da PI: 7.1804 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 24.6 | 2.9e-08 | 154 | 200 | 2 | 48 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteA 48 ++lL cA av++g+l+++q+l l elas +gd+++Rlaa+ ++A Zmw_sc04883.1.g00010.1.am.mk 154 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRA 200 689***************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.457 | 127 | 200 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-5 | 154 | 200 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MHASSCELAC MKAMNCREQE HHELAATASN NGLDWIEDSI SFLTADVDIG GWWSSAPPAA 60 QQDDIGSVVA QTLSPPAPLP TTSSPLPQAS PSIASPAVSS PSEPSSKKRK SPGHRASGQS 120 GSNQRRRAEQ DRQGGKKGGG KGGAGSDRDT RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG 180 ELASFSGDAN HRLAAHGLRA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | GGKKGGG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318969.1 | 2e-91 | nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A1E5VYC7 | 8e-92 | A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein | ||||
STRING | GRMZM2G359304_P01 | 7e-83 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6135 | 28 | 54 |