PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04848.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 356aa    MW: 38366.9 Da    PI: 10.4556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04848.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-19178232256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++k+q  +Le++F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  Zmw_sc04848.1.g00060.1.am.mk 178 RKKLRLSKDQAAVLEDCFKTHSTLNPKQKLALANRLGLRPRQVEVWFQNRRARTK 232
                                   678899***********************************************98 PP
2HD-ZIP_I/II124.55e-40178266189
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlsk+q+++LE++F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLe
  Zmw_sc04848.1.g00060.1.am.mk 178 RKKLRLSKDQAAVLEDCFKTHSTLNPKQKLALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLE 258
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLre 89 
                                   ke ++L++
  Zmw_sc04848.1.g00060.1.am.mk 259 KELADLKA 266
                                   ****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-17166228IPR009057Homeodomain-like
PROSITE profilePS5007116.439174234IPR001356Homeobox domain
SMARTSM003891.7E-16176238IPR001356Homeobox domain
SuperFamilySSF466896.42E-18176243IPR009057Homeodomain-like
CDDcd000869.68E-15178235No hitNo description
PfamPF000462.8E-16178232IPR001356Homeobox domain
PRINTSPR000317.8E-5205214IPR000047Helix-turn-helix motif
PROSITE patternPS000270209232IPR017970Homeobox, conserved site
PRINTSPR000317.8E-5214230IPR000047Helix-turn-helix motif
SMARTSM003402.8E-16234277IPR003106Leucine zipper, homeobox-associated
PfamPF021832.5E-9234266IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLRRTTEEEQ VNNQPPMGLV VGGRRGPANN SSDLASAGAG SERAPLPNDY GCVVGESAGK  60
ARRTAGPWAI PSCRSVAFIG IIYQRALDRS GAARQRTMRH ELVSRSMGDA RRDQARTADP  120
ADQGTRRPST SPDSAAALSS GDSGSNKRER DRELERTGSV NGVRGGAGSD EEDGAGGRKK  180
LRLSKDQAAV LEDCFKTHST LNPKQKLALA NRLGLRPRQV EVWFQNRRAR TKLKQTEVDC  240
EYLKRWCERL ADENKRLEKE LADLKAAPSP VAAATQRSSA AAAFTMCPSC RRVASTAGAG  300
TQHHQQQCHP KSNTAAVAGN VRPSHCQFFP AAVDQTPGQS TWNAAAAAPL VTRELF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226234RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964497.11e-107homeobox-leucine zipper protein HOX2
RefseqXP_025811981.11e-107homeobox-leucine zipper protein HOX2-like
SwissprotQ5VPE32e-82HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U862e-82HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A2S3HLX71e-106A0A2S3HLX7_9POAL; Uncharacterized protein
TrEMBLK3XYL11e-106K3XYL1_SETIT; Uncharacterized protein
STRINGPavir.J26517.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]