PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04846.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 355aa    MW: 39249.4 Da    PI: 10.5812
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04846.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind342.51e-10413411300
                     GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..............rernlalsekkaavaerd........ 57 
                                   mdddg    rn+g+ye     k nlglqlms +a +rd+k+                 n+  +++++++++rd        
  Zmw_sc04846.1.g00030.1.sm.mk   1 MDDDGGLGiRNWGFYETV---KGNLGLQLMSPVApDRDTKTllpnstffqhhghqTAPNQRQHHHQHSHQPRDfgagggga 78 
                                   999999999******988...**********9999******9*******988865445666677788888888******** PP

                     GAGA_bind  58 ............maflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtk.sidslqqlse....p 117
                                               m+f++++++l+  +++   +++k+l+  ++ +++      ++p ++q++++++ +++ ++   +    p
  Zmw_sc04846.1.g00030.1.sm.mk  79 sgavsteshsvhMDFARNEAWLHPSQQHQRAHEHKVLHFGPAGHGVHpghvRHNPISYQMMQDARrNLQIMEA-AQpqpqP 158
                                   ********************************************9989998999**99999887614555554.2224558 PP

                     GAGA_bind 118 qledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlv 197
                                   ql+++++    +ee  +   +e++  + +e++ +kkrq++++pk++k kk+kk  ++++++ ++++  +r++ +kk +++v
  Zmw_sc04846.1.g00030.1.sm.mk 159 QLQQPQELpPCKEEGASPALVEDHSMVRNEQQPVKKRQQSRQPKSPKPKKPKK-AAVPQEDGAPNRPAPRARGPKKAVGMV 238
                                   8887766547788889999999999999*************************.78999999999988************* PP

                     GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
                                   +ngv+lD s++P+PvCsCtG+++qCY+WG+GGWqSaCCt +iS+yPLP+stkrrgaRiagrKmS+gafkk+LekL +eGy+
  Zmw_sc04846.1.g00030.1.sm.mk 239 INGVNLDLSRIPTPVCSCTGTPQQCYRWGAGGWQSACCTNSISTYPLPMSTKRRGARIAGRKMSHGAFKKMLEKLIGEGYN 319
                                   ********************************************************************************* PP

                     GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvti 300
                                   l np+DLk++WAkHGtnkfvti
  Zmw_sc04846.1.g00030.1.sm.mk 320 LDNPIDLKTFWAKHGTNKFVTI 341
                                   *********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.1E-1121341IPR010409GAGA-binding transcriptional activator
SMARTSM012261.3E-1631342IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDDDGGLGIR NWGFYETVKG NLGLQLMSPV APDRDTKTLL PNSTFFQHHG HQTAPNQRQH  60
HHQHSHQPRD FGAGGGGASG AVSTESHSVH MDFARNEAWL HPSQQHQRAH EHKVLHFGPA  120
GHGVHPGHVR HNPISYQMMQ DARRNLQIME AAQPQPQPQL QQPQELPPCK EEGASPALVE  180
DHSMVRNEQQ PVKKRQQSRQ PKSPKPKKPK KAAVPQEDGA PNRPAPRARG PKKAVGMVIN  240
GVNLDLSRIP TPVCSCTGTP QQCYRWGAGG WQSACCTNSI STYPLPMSTK RRGARIAGRK  300
MSHGAFKKML EKLIGEGYNL DNPIDLKTFW AKHGTNKFVT ISQLRTAVKL STGTK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-150protein Barley B recombinant
RefseqXP_021309578.11e-150protein Barley B recombinant
SwissprotQ8GUC31e-127BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B51e-148C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-149(Sorghum bicolor)
STRINGSb02g009782.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697