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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc04810.1.g00020.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | WRKY | ||||||||
| Protein Properties | Length: 263aa MW: 30008 Da PI: 6.5062 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 61.1 | 2e-19 | 69 | 128 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnh 58
Dg+ WrKYGqK++k++e+pr YYrC+++ +C + +++ s+edp + ++tY+ +H++
Zmw_sc04810.1.g00020.1.sm.mk 69 DGHLWRKYGQKKIKDAEHPRLYYRCSYRddrRCLASMLLQQqSSEDPPLYHVTYTYQHTC 128
9**************************99889****999752678*************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 2.5E-20 | 53 | 131 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 5.36E-19 | 62 | 131 | IPR003657 | WRKY domain |
| SMART | SM00774 | 3.3E-27 | 67 | 130 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 2.3E-20 | 69 | 128 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 15.95 | 69 | 131 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 263 aa Download sequence Send to blast |
MESSRMKSEQ TVGFGDSNMQ DAMGSALDSY SPPGSGFELF PPEASPPDGR RRRRDIPSRS 60 EYTYTPYLDG HLWRKYGQKK IKDAEHPRLY YRCSYRDDRR CLASMLLQQQ SSEDPPLYHV 120 TYTYQHTCGA PPVPMPDIMV EQQRPTATAR KQGFVLRFDS PGGHGHHNDM QHHQAMSSRS 180 PYTMLSFGSS NQQPVFRSDP GAGSSSSSSF PTEALPAPST TSMNGDCDMY PAWNSLAYDL 240 EDRMRFSDHE HFHYNSTDFY YDY |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6ir8_A | 5e-13 | 69 | 128 | 10 | 68 | OsWRKY45 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002456547.1 | 1e-91 | probable WRKY transcription factor 30 | ||||
| TrEMBL | C5XNA0 | 3e-90 | C5XNA0_SORBI; Uncharacterized protein | ||||
| STRING | Sb03g038180.1 | 5e-91 | (Sorghum bicolor) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP11529 | 24 | 33 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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