PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04738.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 424aa MW: 48015.6 Da PI: 8.713

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04738.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.6	6.5e-16	108	187	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 ++Yn Y+ e GF +r s+ + rn+ + ++++vC ++g++e+++k+ + r++Ck kl++++++d+ w+v Zmw_sc04738.1.g00010.1.sm.mkhc 108 NYYNLYSWERGFGIRCGGSEIN-RNQYVLMKELVCMCQGRPETNTKT---------SIRCDCKSKLVLQRTEDHGWYVR 176 69**************9998.7777*********9998777.........9****************** PP FAR1 80 kleleHnHela 90 ++ +HnH+l+ Zmw_sc04738.1.g00010.1.sm.mkhc 177 VFVDDHNHPLS 187 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	31	No hit	No description
Pfam	PF03101	2.5E-13	108	187	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-28	309	400	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDRVGISNGA PAACGRGTTV PMYGSISSQG CTSPAPWQIQ SPASSSSSNG CGGVTRQLGV 60 RGPAERTPAS GRVAPIEEAQ LSFKDRPEEC VIILKVGVTF DSSEEDFNYY NLYSWERGFG 120 IRCGGSEINR NQYVLMKELV CMCQGRPETN TKTSIRCDCK SKLVLQRTED HGWYVRVFVD 180 DHNHPLSQTL GEKRHWASHK HLDAYSTSII KHLRSKNVNL SKVYGVMSSI FGSDRHAPFT 240 KRKLKTLCGA IARQSASDDM KKTVELFMQL RDENPDFTYK GDFDDDGTIR TLMWTNGYSK 300 KQYSHFGDVV SFDTTYKTNL YGMPFGMFVG VNNHFQSIIF AGVLMRSETI CNFKWVFRQF 360 NSMMGSTKPQ TVLTDQAHAM RVALESEWPN TRHRWCKWHV LCLAKEHIGY YYNKTICMFL 420 LDSL

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDRVGISNGA PAACGRGTTV PMYGSISSQG CTSPAPWQIQ SPASSSSSNG CGGVTRQLGV  60
RGPAERTPAS GRVAPIEEAQ LSFKDRPEEC VIILKVGVTF DSSEEDFNYY NLYSWERGFG  120
IRCGGSEINR NQYVLMKELV CMCQGRPETN TKTSIRCDCK SKLVLQRTED HGWYVRVFVD  180
DHNHPLSQTL GEKRHWASHK HLDAYSTSII KHLRSKNVNL SKVYGVMSSI FGSDRHAPFT  240
KRKLKTLCGA IARQSASDDM KKTVELFMQL RDENPDFTYK GDFDDDGTIR TLMWTNGYSK  300
KQYSHFGDVV SFDTTYKTNL YGMPFGMFVG VNNHFQSIIF AGVLMRSETI CNFKWVFRQF  360
NSMMGSTKPQ TVLTDQAHAM RVALESEWPN TRHRWCKWHV LCLAKEHIGY YYNKTICMFL  420
LDSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K2DQY4	1e-135	A0A2K2DQY4_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967