PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04716.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 358aa    MW: 39244.1 Da    PI: 8.1036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04716.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.1e-51271591128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lppGfrFhPtdeel+ +yL+k++++ ++++ +vi evdiyk++PwdLp+k+  ++ ewyfFs+rd+ky++g r+nra+ 
  Zmw_sc04716.1.g00050.1.sm.mkhc  27 LPPGFRFHPTDEELILHYLRKRAAAVSCPA-RVIVEVDIYKFDPWDLPAKAVFGDGEWYFFSPRDRKYPNGVRPNRAAG 104
                                     79****************************.99***************87778999*********************** PP

                             NAM  80 sgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     sgyWkatg+dk+++++      +g+ +g+kk Lvfy+gr pkg kt+W+mheyrl
  Zmw_sc04716.1.g00050.1.sm.mkhc 105 SGYWKATGTDKPITHStasvsnRGAMIGVKKALVFYRGRPPKGMKTSWIMHEYRL 159
                                     ***************98887777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-6422192IPR003441NAC domain
PROSITE profilePS5100560.25127192IPR003441NAC domain
PfamPF023651.2E-2628159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTIELALGEP PSSSSSFAGS GMPPTPLPPG FRFHPTDEEL ILHYLRKRAA AVSCPARVIV  60
EVDIYKFDPW DLPAKAVFGD GEWYFFSPRD RKYPNGVRPN RAAGSGYWKA TGTDKPITHS  120
TASVSNRGAM IGVKKALVFY RGRPPKGMKT SWIMHEYRLA DALNAANTYC PARFKNASMR  180
LDNWVLCRIY KKTNPQLTYS SSPPLDAEEN YSMDGGLGHG HGQYQQDASI SAANDVAGRL  240
QLPRPPSISD YLVDYSAVSE MFESIPAPRL GTADTGSSSD PAAAHQFLVG NNIELASGSS  300
VAQQSSHNRR LMEDHSNPNM EMLQHSSNKR VLSDHASMAI NDSFSLFGPG FPSLQDRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-702719217165NO APICAL MERISTEM PROTEIN
1ut4_B3e-702719217165NO APICAL MERISTEM PROTEIN
1ut7_A3e-702719217165NO APICAL MERISTEM PROTEIN
1ut7_B3e-702719217165NO APICAL MERISTEM PROTEIN
4dul_A3e-702719217165NAC domain-containing protein 19
4dul_B3e-702719217165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967928.11e-139NAC domain-containing protein 18
TrEMBLA0A368R2211e-138A0A368R221_SETIT; Uncharacterized protein
STRINGPavir.Ea00837.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123