PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04713.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

DBB

Protein Properties

Length: 311aa MW: 33977.3 Da PI: 4.9437

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04713.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.2	1.4e-07	51	93	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e ++ C ++ lC+ C +e+H H++ p Zmw_sc04713.1.g00070.1.sm.mkhc 51 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 93 7****99*******************6678888888877 PP
2	zf-B_box	27.4	7.2e-09	101	132	3	34
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek + +fC +++ l+C+dC + +H Zmw_sc04713.1.g00070.1.sm.mkhc 101 LPRCDVCQEKAAFIFCVEDRALFCQDCDEPIH 132 689**************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	8.7E-12	47	94	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.798	47	94	IPR000315	B-box-type zinc finger
CDD	cd00021	8.58E-7	50	94	No hit	No description
Pfam	PF00643	1.6E-5	51	94	IPR000315	B-box-type zinc finger
SMART	SM00336	2.0E-13	99	146	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.816	99	146	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.8E-7	101	142	IPR000315	B-box-type zinc finger
CDD	cd00021	2.15E-7	102	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSPSRRADLF PLPPFVFFFH VRFHRSSLIF SCSIQWFLSP QRAKLEGMKI QCDACEGAAA 60 TVVCCADEAA LCARCDVEIH AANKLASKHQ RLPLEALSAR LPRCDVCQEK AAFIFCVEDR 120 ALFCQDCDEP IHVPGTLSGN HQRYLATGIR VGFGSASGCS GADSGGAHDA DHHAPQKAAA 180 EQAPSSQTTT NTTASAEAQQ VPSPPQFLPQ GWAVDELLQF SDYETGDKMQ KESPLGFKEL 240 DWFADVDLFQ DQAPKAGRMA AMVPEMFGSQ AVNDVAYYRP SKATADVRQS KKARIEVLDD 300 EDDYLLVPDL G

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269\|PubMed:12909688, ECO:0000269\|PubMed:17605755, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:21685177, ECO:0000269\|PubMed:22410790, ECO:0000269\|PubMed:23624715}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269\|PubMed:17605755}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953029.1	1e-151	B-box zinc finger protein 25
Swissprot	Q96288	1e-74	BBX24_ARATH; B-box zinc finger protein 24
TrEMBL	A0A368PNF3	1e-150	A0A368PNF3_SETIT; Uncharacterized protein
STRING	Sb04g025400.1	1e-143	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3202	33	68

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Imtiaz M, et al. Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis. Plant Mol. Biol., 2015. 89(1-2): p. 1-19 [PMID:26253592] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209]