PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04709.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 296aa MW: 31428.6 Da PI: 11.0223

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04709.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.6	2.7e-35	53	212	8	131
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ + sss+s Zmw_sc04709.1.g00100.1.sm.mk 53 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapS---TSSSSS 130 589*******************************************************99999444332221...222222 PP TCP 84 nsssg..........................kaaksaa.kskksqksaasalnlakesr.......akarararertrekm 130 + +++ +a +++a ++ +++aa+ +a+ ++ + a ra+e+tr+++ Zmw_sc04709.1.g00100.1.sm.mk 131 HYQQSvlgkrpreegdatvaaasafwaalpsAAPRTEAwGFSPLEAQAATYVPMAQAHHlnllaalSGAARRAEEETRQEH 211 112224557777778888888888888888733344443555555555555555555556677766677777778777776 PP TCP 131 r 131 Zmw_sc04709.1.g00100.1.sm.mk 212 Y 212 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.6E-31	52	151	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MPTRDVPTAA AAMFHVYQPA QIPSTAAPAT AATDGTVKVP ASTQGKKKAA QGGKDRHSKV 60 NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGS GTTPAVFVSS 120 SAPSTSSSSS HYQQSVLGKR PREEGDATVA AASAFWAALP SAAPRTEAWG FSPLEAQAAT 180 YVPMAQAHHL NLLAALSGAA RRAEEETRQE HYYYNRASVK GQQSVQSCWP MATQAADEQI 240 TAMITPGNPR TIPFRPRRSL FLAFPRNRFE GKGNGGQKAA APAARTTAVL PPAARL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452500.1	3e-82	transcription factor TCP7
Swissprot	Q9FMX2	3e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	C5XY73	6e-81	C5XY73_SORBI; Uncharacterized protein
STRING	Sb04g026970.1	1e-81	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100