PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04699.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 238aa MW: 24992.2 Da PI: 4.141 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.3 | 4.1e-24 | 189 | 238 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ Zmw_sc04699.1.g00010.1.sm.mk 189 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQ 238 6799*****************.****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.119 | 186 | 238 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 187 | 238 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-15 | 187 | 238 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 189 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-6 | 192 | 238 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLTVSPARCT GLEERAAAGG HASIGDVGME TEAIGAVSDL DFDFSVDDID FGDFFLRLED 60 DGDALPDLEV DPADIFTDFE EIAGGGNGVV EDQEVPTVHH PSPEVAHVDP CSGAGLAEEN 120 STAIADAEEG KGECNQHADE LVAAANNGDF AGSGTAAVAE EKSTSSTSSQ EAESRGHKSS 180 GKNSHGKKKA KVDWTPELHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-16 | 186 | 238 | 2 | 54 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812542.1 | 5e-86 | probable transcription factor GLK1 | ||||
Swissprot | Q5Z5I4 | 4e-71 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | A0A1E5VSE8 | 2e-90 | A0A1E5VSE8_9POAL; Putative transcription factor GLK1 | ||||
STRING | Pavir.J11422.1.p | 4e-82 | (Panicum virgatum) | ||||
STRING | GRMZM2G026833_P01 | 2e-80 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Publications ? help Back to Top | |||
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