PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04686.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 57aa    MW: 6499.15 Da    PI: 7.4089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04686.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.81.8e-171372359
                                  EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                  sYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  Zmw_sc04686.1.g00090.1.am.mk  1 SYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 37
                                  8***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.92E-13137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-14137IPR003657WRKY domain
PROSITE profilePS5081115.721136IPR003657WRKY domain
SMARTSM007745.9E-8138IPR003657WRKY domain
PfamPF031067.5E-12136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
SYYRCTHSNC RVKKRVERLS EDCRMVITTY EGRHTHTPCS DDADGTDHTG SCAFTSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956420.13e-32probable WRKY transcription factor 12
SwissprotQ93WY42e-21WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A3L6Q7L62e-31A0A3L6Q7L6_PANMI; Putative WRKY transcription factor 12
STRINGSi030985m1e-31(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]