PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04662.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 171aa MW: 18521.6 Da PI: 5.7998 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31 | 5.7e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vk+Ltl+hvkSHLQ+YR+ Zmw_sc04662.1.g00060.1.am.mk 1 MDVKDLTLAHVKSHLQMYRT 20 9******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDVKDLTLAH VKSHLQMYRT VKNTERPATS LDQADGFENG SAGEICDDNS VDLHGYGGGG 60 RPETAPRHGR LAASAACNDH GSGTDAHACC PMELLRKVVT MTPSLALCLE DWTSLPNTGS 120 IQSLKDHQIQ QSKSLEILSD MNSCVSETTT SITSDLNLEF TLGRPHQNRR N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821359.1 | 9e-67 | probable transcription factor RL9 isoform X1 | ||||
TrEMBL | A0A3L6RHT4 | 1e-66 | A0A3L6RHT4_PANMI; Putative transcription factor RL9 isoform X1 | ||||
STRING | Pavir.Fa01877.1.p | 6e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4721 | 36 | 65 |