PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04653.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 323aa    MW: 34263.9 Da    PI: 9.8072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04653.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd+ lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zmw_sc04653.1.g00070.1.am.mk 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                                  79********************************************97 PP

2Myb_DNA-binding50.74.2e-1667112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Zmw_sc04653.1.g00070.1.am.mk  67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                                   89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.846961IPR017930Myb domain
SuperFamilySSF466893.11E-3011108IPR009057Homeodomain-like
SMARTSM007174.0E-131363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-241568IPR009057Homeodomain-like
CDDcd001671.52E-111661No hitNo description
PROSITE profilePS5129424.88762116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002494.1E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2469116IPR009057Homeodomain-like
CDDcd001673.29E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRPPCCEKG GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLSKMG  120
AAGEAGADVK SRSAAPKGQW ERRLQTDIHT ARQALREALS MDPTAPAPAP FVKPEANAPA  180
PAGQATYASS AENIARLLEG WMRPGAGNGN GGKTSSGPSR SSASAASHSG AARTPEGSTG  240
TSGKKEDRGA AAPAPAVWNR EAFEPGQPEA ASLQLGKALN AGTCKSCVRL DPFPPFPPAA  300
QACIALPLQA CSLAGLAWPC MPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
1mse_C1e-25141164105C-Myb DNA-Binding Domain
1msf_C1e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574549.11e-120transcription factor MYB30
SwissprotP813921e-102MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A3L6RLD11e-122A0A3L6RLD1_PANMI; Uncharacterized protein
STRINGPavir.Fa00895.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]