PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04641.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20757.9 Da PI: 12.0435 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p + r+r++lg++ t+ Aa+a++ a +l+g Zmw_sc04641.1.g00010.1.am.mk 131 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 180 69*****99.**********732...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-27 | 130 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-10 | 131 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-19 | 131 | 186 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-28 | 131 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.549 | 131 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 132 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.38E-21 | 134 | 186 | No hit | No description |
PRINTS | PR00367 | 1.1E-8 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MPPRTRKIPV QIPPSKWIAR ERREKARPTP KATASCCGSG LLPFRRPAYR YPSREGSRSR 60 SRRRRLGWLL MQGEYRSSSE ESAAAAAAAA AAAAAAMAPL AAAAAAAVKM EEQAAMAPSA 120 EQHQQQQPRR QYRGVRMRKW GKWVAEIREP HKRTRIWLGS YATPVAAARA YDTAVFYLRG 180 RSARLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-12 | 130 | 186 | 4 | 61 | ATERF1 |
3gcc_A | 1e-12 | 130 | 186 | 4 | 61 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977035.1 | 1e-40 | ethylene-responsive transcription factor RAP2-10-like | ||||
TrEMBL | A0A0A8YFP4 | 3e-39 | A0A0A8YFP4_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A368RZW1 | 3e-39 | A0A368RZW1_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J27349.1.p | 2e-38 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |