PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04623.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 451aa    MW: 48354.5 Da    PI: 10.4775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04623.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-174085147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  r  W + Ed +l+d+v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Zmw_sc04623.1.g00030.1.am.mk 40 RSHWRPAEDARLKDLVAQHGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 85
                                  678*****************************.***********996 PP
2Myb_DNA-binding47.44.3e-1592136147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +++ +E+ +l  a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zmw_sc04623.1.g00030.1.am.mk  92 RRAFSSDEETRLMAAHRAYGSK-WALIARLFP-GRTDNAVKNHWHVL 136
                                   6789******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0093590IPR017930Myb domain
SMARTSM007174.1E-133988IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-2640136IPR009057Homeodomain-like
PfamPF002492.2E-154085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-244293IPR009057Homeodomain-like
CDDcd001679.89E-134384No hitNo description
PROSITE profilePS5129417.1291141IPR017930Myb domain
SMARTSM007171.5E-1091139IPR001005SANT/Myb domain
PfamPF002492.1E-1292135IPR001005SANT/Myb domain
CDDcd001678.90E-994136No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1794139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAAGSFGPAP PAAGEQVVVT GDGCEVEQGR GGQGKKLCAR SHWRPAEDAR LKDLVAQHGP  60
QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI TRRAFSSDEE TRLMAAHRAY GSKWALIARL  120
FPGRTDNAVK NHWHVLTARR KREQSGSLRR RKSTTSSSPL STPAPVIPSH HGPPPVVLRQ  180
HHYPSPHGVL HEAAVYSGDS DESTCTTDLS LGPAFSALSP ARHHQTLPSD DCGGKSAPPF  240
FDFLGVGATS SGSTSPGGGE GLRTMISPTL SWLTCLGIRR WVSERSSTAM PLGNQAGQCV  300
GGGVAGNVDG LEAVGIEVNC YALLAPRVAH EGPHYPRREP KRCRAGKNKA THGREAAKSN  360
ERVFTGLPYT HARTHARGSL SSEWSVVTRS LTQSQVLVAV ASRFSIIAGG RETAAQVAPS  420
FPLRQLFAFH PSVHSFPPSP TWPATGLAGF I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-27431417104C-Myb DNA-Binding Domain
1msf_C2e-27431417104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138150RRKREQSGSLRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260