PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04615.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 331aa    MW: 35445.2 Da    PI: 8.3495
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04615.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.7e-32210265156
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                     k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Zmw_sc04615.1.g00070.1.sm.mkhc 210 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 265
                                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.468207267IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-29208268IPR009057Homeodomain-like
SuperFamilySSF466891.72E-16208268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25210265IPR006447Myb domain, plants
PfamPF002491.1E-7212263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGLDVGEIGV GLDLGLDLRL FAARSAGRMA AAAKGGPAAV DACIKSLEEE RKKIEMFRRE  60
LPLCARLLAD VIEELKKEAV KRGGDVASKA DDCDKRKWMS TAQLWVDSKA KSQESEKEQQ  120
SEITSPEPRL LGGAPMPLRA VAAPPPPPQF RTEGTVRQPG LAVLSPVPAG DEHLQNQNVA  180
ARFAATVPPS TPALGLHAQT QQQQQQQARK ARRCWSPELH RQFVAALHQL GGPQVATPKQ  240
IREVMQVDGL TNDEVKSHLQ KYRLHTRRSP DAAPVTQQIV LVGGLWVPKE QGNSQSGSPQ  300
GPLQFSGSGS GVAASVATVG GDHSSSDEDV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-14210263154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14210263154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14210263154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14210263154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792667.11e-122transcription factor HHO5-like
TrEMBLA0A059Q2Z51e-131A0A059Q2Z5_9POAL; DNA binding protein
STRINGPavir.J18103.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107