PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04611.1.g00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 342aa    MW: 37562.8 Da    PI: 6.7282
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04611.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.74.3e-15741135
                            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Zmw_sc04611.1.g00110.1.sm.mkhc  7 CCHCGVTSTPLWRNGPADKPVLCNACGSRWRTKGS 41
                                    99**************77777***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-8153IPR000679Zinc finger, GATA-type
CDDcd002026.21E-14640No hitNo description
SuperFamilySSF577165.23E-11645No hitNo description
Gene3DG3DSA:3.30.50.105.1E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385740IPR000679Zinc finger, GATA-type
PfamPF003201.2E-12741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVKQGPCCHC GVTSTPLWRN GPADKPVLCN ACGSRWRTKG SLANYTPMHR RDDIDDEEPR  60
ASRLRPPTSK PKAQKAKQIT KRTTMENGPF SAQNFRRMGD ADPCNRSSSG SAVSYSESCV  120
PYGAADASEM TGSAQSHAWE SLVPSKKRSC INRPKDSPVE KLAKDLNSIM HEEQFYHLSG  180
SSEDDLLYHS ETPVGSVEIG SGSVLLRNMY SKSLEEESEA SSVPAENKSY VTSESFSGSA  240
SFGVHSGTKE ASNLKSAFER PKMSRLQIED NVRRDALYCE NPHILESADS PLVSIDVEEK  300
EIEETGEEKN ISGLKGITKP AMKPLKRPHD THFQSCAGHF DS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825664.11e-157GATA transcription factor 26-like isoform X3
TrEMBLA0A0A9DBB71e-161A0A0A9DBB7_ARUDO; Uncharacterized protein
STRINGSb06g024200.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464