PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04562.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 389aa MW: 40774.1 Da PI: 6.1218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04562.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	300	337	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Zmw_sc04562.1.g00030.1.am.mk 300 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 337 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.992	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.44E-5	298	341	No hit	No description
SuperFamily	SSF47459	2.22E-10	298	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-8	302	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MADHQEMIHA AAAAAATGTS SHGHGVDWWS AAVSCSPAGW SAPADGNSSR SGNAASSESP 60 RSISFGAGVS SVTFQEPAGV IQRPAAVAVP QPVAGTFTGD WSQPYYLDGS DFHGYMSARN 120 DQGHMNAPSL TSPSSSNNPM MAQEPHDPNH QFLSNLGLEL LSSPTSSSGG FRSSSLLRSL 180 TEPAASAKPL AGFQQYHLQQ QTMMNQAPGS VREALQFSNN TPFWNPALGF SGPEAAESLG 240 TASQSLAQSR PASSLEDKSA LEVAGDSSSI IAKKANTDPT PRIKKARTGT PSPLPTFKVR 300 KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHEQ VGMSTDSSEA ATMGDLSGRG 360 LCLVPISSTF AVASETPVDF WTPFGAAFR

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MADHQEMIHA AAAAAATGTS SHGHGVDWWS AAVSCSPAGW SAPADGNSSR SGNAASSESP  60
RSISFGAGVS SVTFQEPAGV IQRPAAVAVP QPVAGTFTGD WSQPYYLDGS DFHGYMSARN  120
DQGHMNAPSL TSPSSSNNPM MAQEPHDPNH QFLSNLGLEL LSSPTSSSGG FRSSSLLRSL  180
TEPAASAKPL AGFQQYHLQQ QTMMNQAPGS VREALQFSNN TPFWNPALGF SGPEAAESLG  240
TASQSLAQSR PASSLEDKSA LEVAGDSSSI IAKKANTDPT PRIKKARTGT PSPLPTFKVR  300
KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHEQ VGMSTDSSEA ATMGDLSGRG  360
LCLVPISSTF AVASETPVDF WTPFGAAFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972712.1	1e-169	transcription factor bHLH112
TrEMBL	A0A368RHX5	1e-168	A0A368RHX5_SETIT; Uncharacterized protein
STRING	Pavir.Fa02016.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87