PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04560.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 20966 Da PI: 8.8551 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.8e-32 | 59 | 115 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+k Zmw_sc04560.1.g00030.1.sm.mk 59 DGYSWRKYGQKKVKGSEFPRSYYKCTHPNCPVKRKVETTL-DGQIAEIVYSGEHNHPK 115 9***************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 3.66E-25 | 55 | 116 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.1E-28 | 56 | 116 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-34 | 57 | 115 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 59 | 114 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.905 | 59 | 116 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDERLRLQQS TGPRLKDAGS GMLEEMEVDT EQHVPCDHLA TYQAVRKPLG SLKNCVSYDG 60 YSWRKYGQKK VKGSEFPRSY YKCTHPNCPV KRKVETTLDG QIAEIVYSGE HNHPKPHSLM 120 KPLSSTKTEV AVTNLRWQKW VQETTRLPVI TVSNCINQFT PAHLIVGSQF QIALFHLFLG 180 STGCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-17 | 59 | 116 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311123.1 | 9e-52 | WRKY transcription factor 44 | ||||
Swissprot | Q6B6R4 | 3e-27 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A0A9PMD8 | 1e-54 | A0A0A9PMD8_ARUDO; Uncharacterized protein | ||||
STRING | BRADI4G45290.1 | 4e-51 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Publications ? help Back to Top | |||
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