PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04554.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 534aa    MW: 57956.9 Da    PI: 9.3602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04554.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.6e-1415111399
                                   EE-..-HHHHT..T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                            B3   3 kvltpsdvlks..grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                   kvl+p+++++s  + l+++   a++   gg  +++ t  + +   +++W v +   + +++ +l++GW eFv a+g+ +  
  Zmw_sc04554.1.g00040.1.am.mk  15 KVLLPPSSFSSscHKLRISDALARRLddGGAGAGG-TAFVVSpVGSKVWHVAV--GRDDDGAFLGRGWPEFVAAHGIGASW 92 
                                   78888888888788899999999999975555555.5555551666*******..************************** PP

                                   EEEEEE-SSSEE..EEEEE-S CS
                            B3  79 fvvFkldgrsefelvvkvfrk 99 
                                   fvvF++dg  ++ l+vk+f++
  Zmw_sc04554.1.g00040.1.am.mk  93 FVVFRHDG--GGVLTVKAFDT 111
                                   *****765..77789*99987 PP
2B344.52.8e-14146230997
                                   HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                            B3   9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                     ++++ + +p kf+++h   g   ++s +  l ++ g+ W+v++  +  sg+++l++GW++F  +ng++eg+ ++++++g
  Zmw_sc04554.1.g00040.1.am.mk 146 RGFTEK-MAIPLKFVRTHltaG---TNSDMPALLNLGGKYWRVEVE-KDVSGSVFLSTGWSRFLASNGINEGEALLLRYEG 221
                                   445554.99*********8643...35567899************4.44456799************************** PP

                                   SSEE..EEEEE CS
                            B3  87 rsefelvvkvf 97 
                                   ++ f  +vkvf
  Zmw_sc04554.1.g00040.1.am.mk 222 NMVF--TVKVF 230
                                   **99..88877 PP
3B347.43.5e-15297388186
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   ++k+++++++l+++ + l  +f++++g ++++ +tlt ++ s         sW+v+ +++ +s   + ++GW +F+++n+L
  Zmw_sc04554.1.g00040.1.am.mk 297 WIKKEIKAYALSNH-VPLAGRFCKAIGFSEPCVITLTTTTYSTasggaaaGSWKVRGCVDSHSTCKLGGRGWTSFCRDNRL 376
                                   78999********9.***********99999987777777666889***********999999889999************ PP

                                   -TT-EEEEEE-S CS
                            B3  75 kegDfvvFkldg 86 
                                   +egD+++F ++g
  Zmw_sc04554.1.g00040.1.am.mk 377 REGDVCTFNVVG 388
                                   ********9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.8E-814112IPR003340B3 DNA binding domain
PfamPF023623.9E-1115111IPR003340B3 DNA binding domain
PROSITE profilePS508639.47415112IPR003340B3 DNA binding domain
CDDcd100175.40E-815110No hitNo description
Gene3DG3DSA:2.40.330.102.7E-1316113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1321114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-19134235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20135238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.155137233IPR003340B3 DNA binding domain
CDDcd100175.72E-15138230No hitNo description
SMARTSM010193.7E-13140233IPR003340B3 DNA binding domain
PfamPF023629.6E-12149230IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-12293398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-13295398IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-9298388IPR003340B3 DNA binding domain
SMARTSM010190.048298400IPR003340B3 DNA binding domain
CDDcd100171.59E-6347384No hitNo description
PROSITE profilePS508639.319347400IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGPTGDHRAI SSHLKVLLPP SSFSSSCHKL RISDALARRL DDGGAGAGGT AFVVSPVGSK  60
VWHVAVGRDD DGAFLGRGWP EFVAAHGIGA SWFVVFRHDG GGVLTVKAFD TSSCLHEFSR  120
RLIVAANGSD AAIGPRRPQF IKVLLRGFTE KMAIPLKFVR THLTAGTNSD MPALLNLGGK  180
YWRVEVEKDV SGSVFLSTGW SRFLASNGIN EGEALLLRYE GNMVFTVKVF GLDGCEKSFN  240
KPRDEGVTIS WVQDAPSSSP AGQREGRRDK RQAPSVAETK AKRPRSNCTY EIGPPSWIKK  300
EIKAYALSNH VPLAGRFCKA IGFSEPCVIT LTTTTYSTAS GGAAAGSWKV RGCVDSHSTC  360
KLGGRGWTSF CRDNRLREGD VCTFNVVGPT LWHVDIARRC STRHEPTAPN LSSSSSSVAM  420
HNSFTSSAQA IPPEFVKNHM ADAQTNGELA VLLRLAGTKF RRVELETDPS GNVLLLRLEG  480
SMAFTVKVLR PDGCQKSFES RKEHLRILDL EQINDCIFKP DELAGRHVSE RAVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.11e-114putative B3 domain-containing protein Os04g0347400
STRINGPavir.Ga02236.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187