PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04554.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 158aa    MW: 17399.3 Da    PI: 7.5854
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04554.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-11741313899
                                   EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                   +    +++W+v++   + +++ +l++GW eF  a+g+ +  fvv++++   +++l+vk+f++
  Zmw_sc04554.1.g00010.1.sm.mk  74 VSPFGSKVWRVEV--GRDGEGAFLGRGWPEFLAAHGIGVDWFVVLRHE--GGATLTVKAFDA 131
                                   4445569******..99999**************************65..58889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1176134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1078134IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-978131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MAEHFKMLLS PPIERPVSIT PRPLTILKRR HSTPLTELNR PADPIILVLQ RVADELAGCF  60
AVADGVPALV ALVVSPFGSK VWRVEVGRDG EGAFLGRGWP EFLAAHGIGV DWFVVLRHEG  120
GATLTVKAFD ASFCIKEFRA PAEGKDFRVA LIREWFGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.28e-41putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS752e-19Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A1Z5RBP14e-39A0A1Z5RBP1_SORBI; Uncharacterized protein
STRINGSb06g002075.13e-38(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187