PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04548.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 261aa MW: 28510 Da PI: 5.2234

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04548.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.8	2.7e-06	110	170	1	54
TT--SS--HHHHHHHHHHHH......HSSS--HHHHHHHHHHC.TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe......knrypsaeereeLAkkl.gLterqVkvWFqNrRak 54 rrkRt +++eq++e e++ +n ++ ++ e+L+++ ++t +q k+W Nr+ak Zmw_sc04548.1.g00010.1.am.mkhc 110 RRKRTIMNDEQIHEIEKALVdepemhRNTTLLHAWSEKLSMQGpEITPSQLKNWLNNRKAK 170 89*************988444443566666666677777769**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-6	96	172	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.48E-6	106	176	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.122	107	174	IPR001356	Homeobox domain
SMART	SM00389	2.2E-4	109	178	IPR001356	Homeobox domain
CDD	cd00086	9.37E-6	110	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEVATPTPLI KQEATVKDET PITCASINGG LLQNAVGQDL VHLGVARTTS AGHAAVSNAV 60 DTGHQPIKMD LDPESSSAEH FKTPEFAKEI GLQEDEKGDA NMYDERQPKR RKRTIMNDEQ 120 IHEIEKALVD EPEMHRNTTL LHAWSEKLSM QGPEITPSQL KNWLNNRKAK LARIAKERGV 180 PYECEIADKP SVPAATHLGD SSESAGEDNY LPPAKVMSAL GISKGSRLIS PDSSDFSRPL 240 TRSFSFEPGC LISLTDSDGK L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979857.1	1e-123	nodulin homeobox isoform X1
Refseq	XP_022684920.1	1e-124	nodulin homeobox isoform X2
Refseq	XP_025827633.1	1e-124	nodulin homeobox isoform X2
TrEMBL	A0A368SAE6	1e-122	A0A368SAE6_SETIT; Uncharacterized protein
STRING	Pavir.J17044.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5126	14	18