PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04526.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 274aa MW: 28583.7 Da PI: 7.866

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04526.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	88.8	1.2e-27	1	107	15	126
TCP 15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaks 93 +g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a ai +l+ + ++a ++ +++ +++++ + ++ Zmw_sc04526.1.g00010.1.am.mk 1 KGIRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAIEWLINAAAGAIEKLPAL-DPAAFAVvpAPNEAKVNQQ------RGSK 74 699************************************************.4444344664444455544......2223 PP TCP 94 aakskksqksaasalnlak.esrakarararert 126 + s+ s++s+ s l+l++ +sr + +r re t Zmw_sc04526.1.g00010.1.am.mk 75 SGGSSTSETSKGSELSLSRsDSR-ASASRDREVT 107 33445555555556777774444.4444456644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.545	1	48	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-25	1	104	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
KGIRDRRVRL SVPTAIQFYD LQDRLGYDQP SKAIEWLINA AAGAIEKLPA LDPAAFAVVP 60 APNEAKVNQQ RGSKSGGSST SETSKGSELS LSRSDSRASA SRDREVTVAS TSAQAASFTE 120 LLTGVAEHRQ AWPSPPNVSA AAADCVGIAH PEKGANGMST HAFSGLAGVK FGNAPPFGMV 180 PAQPFNFSAS AEMPHFSLAQ DALAAASASA PAGDYNLNFS MSSGHQQQQL QPFLFGHAAA 240 AAAHPSSENH LSASAALQLW DGFRHSGMKE KSKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-22	1	49	7	55	Putative transcription factor PCF6
5zkt_B	2e-22	1	49	7	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008644443.1	1e-133	transcription factor PCF6
Swissprot	Q10CE8	4e-81	PCF6_ORYSJ; Transcription factor PCF6
TrEMBL	A0A1D6GG32	1e-132	A0A1D6GG32_MAIZE; Transcription factor TCP2
STRING	GRMZM2G089361_P01	1e-133	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3094	32	71