PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04522.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 360aa MW: 40223.1 Da PI: 10.181

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04522.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59	8.2e-19	5	84	17	90
E--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 17 vlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +p +f++++ ++ k+ s+ tle +sgr+W++ + r++ +++++t+GW++Fv+++ L+e +f+vF++dg+++f Zmw_sc04522.1.g00070.1.am.mk 5 KIPPSFCKHIpweasrraKSLKQASMAATLEGPSGRTWRMVI--RRSAEGTFFTSGWSKFVRDQALRELEFLVFRYDGNTRF 84 59***777999996666799**************..*******************************99777 PP
2	B3	52.6	8.3e-17	259	345	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +++ +v s ++++p f ++h ++e ++++l+d+sg+ W v +i ++++r l++GW F++ n L+egD +vF+l+ Zmw_sc04522.1.g00070.1.am.mk 259 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPSGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELV 334 67788999999******9995..345679***********4.444455..9********************99 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 ef +v++fr Zmw_sc04522.1.g00070.1.am.mk 335 AAAEF--RVHIFR 345 86666..999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.563	1	92	IPR003340	B3 DNA binding domain
SMART	SM01019	5.4E-5	3	92	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.0E-16	4	94	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.6E-16	5	84	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.14E-17	5	96	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.56E-14	6	84	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.6E-22	248	345	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.33E-23	248	345	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.67E-24	253	345	No hit	No description
PROSITE profile	PS50863	13.958	255	347	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-9	255	347	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-15	258	345	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MRTQKIPPSF CKHIPWEASR RAKSLKQASM AATLEGPSGR TWRMVIRRSA EGTFFTSGWS 60 KFVRDQALRE LEFLVFRYDG NTRFAAMAFG TSGCEREDLM LAAPRPPGRK RGRPSAASRG 120 VARAAKKNKE SVGMELVPYR APSAGPSDHT CSEDTPELAV GPVKAEVPDA DELALCVAIP 180 APPSAARGPG AHQVDLTHAA KTRSIHDDLT ALEDDIPESV RRYKGYVSRR RPVTGAERQR 240 AMELAYAFRS SLPYCVMRMS TMHVYYSFMM RFPTGFSRQH LPRERTDVVL RDPSGKAWVV 300 LYIPNTRDRL SRGWCAFARG NCLEEGDYCV FELVAAAEFR VHIFRVVEPP VPAVRLRSSA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MRTQKIPPSF CKHIPWEASR RAKSLKQASM AATLEGPSGR TWRMVIRRSA EGTFFTSGWS  60
KFVRDQALRE LEFLVFRYDG NTRFAAMAFG TSGCEREDLM LAAPRPPGRK RGRPSAASRG  120
VARAAKKNKE SVGMELVPYR APSAGPSDHT CSEDTPELAV GPVKAEVPDA DELALCVAIP  180
APPSAARGPG AHQVDLTHAA KTRSIHDDLT ALEDDIPESV RRYKGYVSRR RPVTGAERQR  240
AMELAYAFRS SLPYCVMRMS TMHVYYSFMM RFPTGFSRQH LPRERTDVVL RDPSGKAWVV  300
LYIPNTRDRL SRGWCAFARG NCLEEGDYCV FELVAAAEFR VHIFRVVEPP VPAVRLRSSA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969798.1	1e-177	B3 domain-containing protein Os01g0723500 isoform X1
Swissprot	Q8S2E6	1e-162	Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBL	C5XIE6	0.0	C5XIE6_SORBI; Uncharacterized protein
STRING	Sb03g033260.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12792	31	35