PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04510.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 478aa MW: 51376.7 Da PI: 10.153 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 87.4 | 3.9e-27 | 300 | 478 | 5 | 134 |
YABBY 5 ssseqvCyvqCnfCntilavs.............vPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslke 69 s +eq+Cyv+Cn C+tilavs vP +slfk+vtvrCGhCt+llsvnl+ + +a ++l+ ++ Zmw_sc04510.1.g00120.1.am.mk 300 SPTEQLCYVHCNCCDTILAVSdhrcgaerappvgVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAAPPAANQLNFGVQS 380 578****************8777777777777779*************************998676778888988887777 PP YABBY 70 e.....................lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvir..... 117 + l+e+ + ++++ n ++++as+ ++++ + +++ e+p vp v+r Zmw_sc04510.1.g00120.1.am.mk 381 SllsptsphglldelalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRrkdld 461 78889999******9999998766777777777777777777777666655447776644444444311345577644444 PP YABBY 118 PPekrqrvPsaynrfik 134 PekrqrvPsaynrfik Zmw_sc04510.1.g00120.1.am.mk 462 SPEKRQRVPSAYNRFIK 478 7***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-29 | 301 | 478 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
LSRHTVPFSI ARLKLSGPAD RSIGLSAGRL GRACVVKLTG IRTGLRTHGL RATNRSVRSV 60 DLRARFHRAR ENRARPGSGF LSRERKTWPH AGAVKSIARS DAPCHTCPLA RRHSASNARA 120 STLRTYSYEV EYERTATTLA IELLRRKSPD RSGRETAGIA PQLSGARGCE TPEPHHSVPL 180 LLSQTVSRCR PLQRAESTGG EEASAWPPAA FVVQSEPRCL PLPIPASLDC FLRLVDPALT 240 LPAFPSLLSA RSTCIAFSDQ RQRRGARCVG AATDIHLAEI MMSSSSSSTA AFPLDHLAPS 300 PTEQLCYVHC NCCDTILAVS DHRCGAERAP PVGVPCSSLF KTVTVRCGHC TNLLSVNLRG 360 LLLPPAAPPA ANQLNFGVQS SLLSPTSPHG LLDELALQAP SLLMEQASAN LSSITGNSYS 420 SSCASNVPAM SMQPAAAKPV QHEPELPAKS VPSVNRRKDL DSPEKRQRVP SAYNRFIK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |