PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04510.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 287aa MW: 32356.8 Da PI: 6.7

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04510.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.6	5.3e-32	3	77	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLvfy+grap+g+++dW+mheyrle Zmw_sc04510.1.g00030.1.am.mk 3 EQNEWYFFSHKDKKYPTGTRTNRATTTGFWKATGRDKPIYT-KNCLVGMRKTLVFYRGRAPNGHNSDWIMHEYRLE 77 578************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.131	1	97	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-36	3	97	IPR003441	NAC domain
Pfam	PF02365	1.7E-14	6	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEEQNEWYFF SHKDKKYPTG TRTNRATTTG FWKATGRDKP IYTKNCLVGM RKTLVFYRGR 60 APNGHNSDWI MHEYRLETSE NATAPEEGWV VCRVCKKRVA TVQRMSESPP CWFDDHSAGF 120 MPALGSPRQL LQHHRNTSAA YVGQHQPLYH CKPELEYHHL LPSQEAFLPQ LPQLESPNSK 180 PPVYIGHGSG SSLQSSEHSR YTPQQQTMAS AAYMAAVDDS ATDWSVLDKF VASQLFSHGD 240 STSKEPSYSS PVPAFQLTES NNQEETQDLV DYASTSASGG DQADLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-30	4	98	70	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-30	4	98	70	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-30	4	98	70	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-30	4	98	70	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	4	98	73	169	NAC domain-containing protein 19
3swm_B	1e-29	4	98	73	169	NAC domain-containing protein 19
3swm_C	1e-29	4	98	73	169	NAC domain-containing protein 19
3swm_D	1e-29	4	98	73	169	NAC domain-containing protein 19
3swp_A	1e-29	4	98	73	169	NAC domain-containing protein 19
3swp_B	1e-29	4	98	73	169	NAC domain-containing protein 19
3swp_C	1e-29	4	98	73	169	NAC domain-containing protein 19
3swp_D	1e-29	4	98	73	169	NAC domain-containing protein 19
4dul_A	9e-30	4	98	70	166	NAC domain-containing protein 19
4dul_B	9e-30	4	98	70	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825485.1	1e-147	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	4e-76	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2T7F9P2	1e-148	A0A2T7F9P2_9POAL; Uncharacterized protein
STRING	Pavir.J39804.1.p	1e-148	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]