PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04500.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 337aa MW: 36758.8 Da PI: 7.0328

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04500.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.9	1.8e-11	55	123	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....................TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....................kgRtlkqcksrwqkyl 48 rg+W +Ed+ lv++v+ +G g+W++ a+ g ++Rt+k+c++rw++yl Zmw_sc04500.1.g00040.1.am.mk 55 RGPWMVDEDLALVNYVAAHGEGRWNSLAAAAGtyvlafslcfsslanaaiytgLKRTGKSCRLRWLNYL 123 89******************9999999999999999999999999999***************97 PP
2	Myb_DNA-binding	55.8	1e-17	129	172	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++ Zmw_sc04500.1.g00040.1.am.mk 129 RGNFTADEQMLILDLHSRYGNR-WSKIAQHLP-GRTDNEIKNYWRT 172 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	9.547	50	123	IPR017877	Myb-like domain
SMART	SM00717	1.5E-8	54	125	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.35E-25	54	170	IPR009057	Homeodomain-like
Pfam	PF00249	6.2E-11	55	123	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-20	56	130	IPR009057	Homeodomain-like
CDD	cd00167	4.95E-7	57	123	No hit	No description
PROSITE profile	PS51294	23.832	124	178	IPR017930	Myb domain
SMART	SM00717	1.8E-16	128	176	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-16	129	172	IPR001005	SANT/Myb domain
CDD	cd00167	1.89E-13	131	172	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-25	131	177	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MLNRSTSNSN MASSPHSSHS ATAPAPTTDA LFARSSGVAV DVDGGAGQKD QLIRRGPWMV 60 DEDLALVNYV AAHGEGRWNS LAAAAGTYVL AFSLCFSSLA NAAIYTGLKR TGKSCRLRWL 120 NYLRPDVKRG NFTADEQMLI LDLHSRYGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ 180 LNCDANSKRF KDAMRYLWMP HLVDGHRHHL HAADHQQQAT ATAANHDGYY HAAAALSAGA 240 MGVPSSSSDS FATTTSESYE YDAGFPPNWE PSSCYDSAAA GGLYAGEMLV PGGGGDCWVQ 300 ETSQQQAGMM WPEEQKAALG VNGGQFEDAE LNVWKTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-21	52	176	1	103	C-Myb DNA-Binding Domain
1msf_C	2e-21	52	176	1	103	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962755.1	1e-100	transcription factor JAMYB
TrEMBL	K3Z8G1	6e-99	K3Z8G1_SETIT; Uncharacterized protein
STRING	Pavir.Cb00499.1.p	1e-100	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330