PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04484.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 385aa MW: 41845.9 Da PI: 6.5238

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04484.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.6	3.2e-13	63	144	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessst 78 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g+ ++s +qCk++ + l+kryk +++ + + Zmw_sc04484.1.g00030.1.sm.mk 63 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYskaSKSDVQCKNRVDTLKKRYKVERAKPVS-------S 136 ***********************************86667733256999************99887775.......5 PP trihelix 79 cpyfdqle 86 +++fd+l+ Zmw_sc04484.1.g00030.1.sm.mk 137 WQFFDRLD 144 99999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.3E-23	61	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDDDDGVPAS ASPSPASSPV TDPVTVAAEP PGGAFALKLP IQRTAASLYP TSSGGGGGRE 60 DAWSEGATSA LIDAWGERFV ALGRGSLRHP QWQEVADAVS SRDGYSKASK SDVQCKNRVD 120 TLKKRYKVER AKPVSSWQFF DRLDELLAPI YGQKPADGIG GGHIPNGRDP MPAALRAGFP 180 QRSRTAAVKR REPSPEPSAS VESSDGFPPP ALPVANGKRR RTEEDRGDGG SDRDRVQGLR 240 ELSVAIRRLG EAYERVETAK LEQAVETERR RMEFARELES ERVQIFLNTQ MELTQSKNRS 300 SPAAVTIPSS AITVGAGSRR MSVAADAGGS SNHHSRYRIS HGDRHRHAPR HHYRYHDNHH 360 AASVAANEGE QTGEEDDDEE EEESQ

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDDDDGVPAS ASPSPASSPV TDPVTVAAEP PGGAFALKLP IQRTAASLYP TSSGGGGGRE  60
DAWSEGATSA LIDAWGERFV ALGRGSLRHP QWQEVADAVS SRDGYSKASK SDVQCKNRVD  120
TLKKRYKVER AKPVSSWQFF DRLDELLAPI YGQKPADGIG GGHIPNGRDP MPAALRAGFP  180
QRSRTAAVKR REPSPEPSAS VESSDGFPPP ALPVANGKRR RTEEDRGDGG SDRDRVQGLR  240
ELSVAIRRLG EAYERVETAK LEQAVETERR RMEFARELES ERVQIFLNTQ MELTQSKNRS  300
SPAAVTIPSS AITVGAGSRR MSVAADAGGS SNHHSRYRIS HGDRHRHAPR HHYRYHDNHH  360
AASVAANEGE QTGEEDDDEE EEESQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975744.1	1e-166	trihelix transcription factor ASIL2
TrEMBL	A0A368RUH8	1e-164	A0A368RUH8_SETIT; Uncharacterized protein
STRING	Si010246m	1e-165	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2404	30	69