PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04479.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 331aa    MW: 36236.1 Da    PI: 9.7335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04479.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.3e-07176198223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   +CpdCg+ F r+++L+ H++  H
  Zmw_sc04479.1.g00070.1.sm.mk 176 PCPDCGEIFVRQESLQMHQSIrH 198
                                   7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-4174194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141175199IPR007087Zinc finger, C2H2
SuperFamilySSF563991.09E-7200311No hitNo description
Gene3DG3DSA:3.90.228.102.3E-4209310IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVEPAGRSAA ARKAKLKQSR WGIEPPPESP SYRLALKNLF SCRNSYGHPD SSSSRSNKKK  60
QQQLGCSSAP SICQQLPKDN EQVKPPRDEG GEPCKRRASV SSSSSERHVK KPLSEVSNNK  120
LQRGCGLGGS SSSSSSTGGG SFRAGMQLRR LSGCYECHNM VVDPNSSSMR ATTICPCPDC  180
GEIFVRQESL QMHQSIRHAV CELGLDDTSR NIIEIIFQSS WLKKQSPVCR IERILKVHNT  240
ARTLARFEEY RDAVKAKAQK KKTKLHPRCT ADGNELLRFH CTALGCSLGL HSATHLCGAC  300
PTCSIIRDGF FDKSDGIRTM ATSGRAHDAA Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824982.11e-129uncharacterized protein LOC112900370
TrEMBLA0A2S3IBV11e-127A0A2S3IBV1_9POAL; Uncharacterized protein
STRINGGRMZM2G136494_P011e-125(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880