PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04405.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 423aa MW: 45197.1 Da PI: 7.2257

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04405.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.5	1.1e-16	251	302	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr rr+++NRe+ArrsR+RK+a + Le+ v++L++eN +L k +l++ ++ Zmw_sc04405.1.g00040.1.sm.mkhc 251 VKRMRRMESNRESARRSRKRKQAHLTGLETQVDQLQGENASLFK---QLTDANQQ 302 69**************************************9995...55555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	248	312	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.093	250	302	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.38E-13	251	303	No hit	No description
Pfam	PF00170	1.7E-14	251	299	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-13	252	302	No hit	No description
CDD	cd14702	4.33E-21	253	303	No hit	No description
PROSITE pattern	PS00036	0	255	270	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MAFVLGCWRS IPVHRVLFHP LQPTQTALVA LPLWRSPAVP QHRGKLVDIS QEQARERGQY 60 AFHAGLRCGQ PPSSLLPLLS PPIAEKTFLF FPGSSASSLK ALLHADAART IALQITVKER 120 EVLAVRSTYA QMKKCPSELE LEAFIGGVES DAEQKPGHVA QFGDGVIFQA GGGDLSPFSF 180 ADSVSGKQRK VVLCRLSEVM VLAAASPASA TNLNVKESQT LGGSSGSDSD SDSLFDNEGG 240 LCEQSTNKLN VKRMRRMESN RESARRSRKR KQAHLTGLET QVDQLQGENA SLFKQLTDAN 300 QQFTASVTDN RILKSNVEAL RAKVKLAEDM VARGAVSCGL GHLGLSPALN PPDVLSGLEF 360 PGDDACFTSL SPTEQVLNSP LQSIASLESI DNRVASEVTS CGGGGAGVDV WGWDSHPNGG 420 LSK

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MAFVLGCWRS IPVHRVLFHP LQPTQTALVA LPLWRSPAVP QHRGKLVDIS QEQARERGQY  60
AFHAGLRCGQ PPSSLLPLLS PPIAEKTFLF FPGSSASSLK ALLHADAART IALQITVKER  120
EVLAVRSTYA QMKKCPSELE LEAFIGGVES DAEQKPGHVA QFGDGVIFQA GGGDLSPFSF  180
ADSVSGKQRK VVLCRLSEVM VLAAASPASA TNLNVKESQT LGGSSGSDSD SDSLFDNEGG  240
LCEQSTNKLN VKRMRRMESN RESARRSRKR KQAHLTGLET QVDQLQGENA SLFKQLTDAN  300
QQFTASVTDN RILKSNVEAL RAKVKLAEDM VARGAVSCGL GHLGLSPALN PPDVLSGLEF  360
PGDDACFTSL SPTEQVLNSP LQSIASLESI DNRVASEVTS CGGGGAGVDV WGWDSHPNGG  420
LSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	270	RRSRKRK
2	264	271	RRSRKRKQ
3	266	271	SRKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315644.1	1e-133	basic leucine zipper 9-like isoform X1
Swissprot	Q6ETX0	1e-105	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBL	A0A194YMZ4	1e-131	A0A194YMZ4_SORBI; Uncharacterized protein
STRING	Sb04g005020.1	1e-132	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]