PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04401.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 313aa MW: 32984.9 Da PI: 5.9415 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 59.6 | 8.1e-19 | 185 | 232 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqv+gCead+ e+k yhrrh+vC +++a++vl++g+++r+CqqC++ Zmw_sc04401.1.g00010.1.sm.mkhc 185 RCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVLLDGVQKRYCQQCGK 232 6*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-17 | 182 | 235 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.811 | 183 | 245 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.29E-21 | 184 | 249 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-13 | 186 | 243 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MDAPYSGGGG VDAGEPVWDW GNLLDFVVQD DDSLVLPWDD VAGTGAAGPT EAGASLLATP 60 PPQPAEVEAN QEPEPEPEPV LPPLPLHVQG IGRRVRKRDP RLVCPNYLAG RVPCACPEVD 120 EMAAAAEVED VATELLAGAR KKVKTAGRRG KAGAVGGAGG SGGGVSTTGG GSGGGGRAVV 180 AAEMRCQVPG CEADIRELKG YHRRHRVCLR CAHAAAVLLD GVQKRYCQQC GKRKLERHNK 240 RRRRKPDSKV PFEKEMDEHL DLSADVSGDG ELREASVEAS SGAKQESVKL NNSPIHDLKT 300 AYSSSNSLDA YDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 6e-26 | 185 | 249 | 5 | 84 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 243 | KRKLERHNKRRRR |
2 | 238 | 245 | NKRRRRKP |
3 | 239 | 244 | KRRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656292.2 | 1e-114 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q6I576 | 1e-103 | SPL9_ORYSJ; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A1D6FQB4 | 1e-119 | A0A1D6FQB4_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
STRING | GRMZM2G109354_P01 | 1e-116 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Publications ? help Back to Top | |||
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