PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04381.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28640.2 Da PI: 8.3078 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTt+Ed+ll++ v+q+G g W++++++ g++R +k+c++rw +yl Zmw_sc04381.1.g00030.1.am.mk 6 KGLWTTQEDKLLIEHVRQHGDGGWNSVSKHTGLKRNGKSCRLRWVNYL 53 678*****************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.6e-16 | 60 | 103 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 gr T +E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ Zmw_sc04381.1.g00030.1.am.mk 60 GRITSQEERIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 103 789******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.874 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-13 | 5 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.28E-28 | 5 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.2E-16 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 7 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-10 | 9 | 53 | No hit | No description |
PROSITE profile | PS51294 | 24.027 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-15 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 60 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 61 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-10 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVHSLKGLWT TQEDKLLIEH VRQHGDGGWN SVSKHTGLKR NGKSCRLRWV NYLRPDLKHG 60 RITSQEERII VQLHALWGNR WSTIARSLPG RTDNEIKNYW RTHFKKAKPS KNIERARAQF 120 LKQRREMQCQ QQQQQLQLVR KNEDSKLDAT RTAGTVEDED RGSAVVDNAC PATTTAAVAD 180 QSGHHLAADL VMHDAIMDFM CPMSFSLLLH VAGGCCGSTS EEYRSSEEDG ATWGSLWNLE 240 DVFVNGGGGA CSLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 6 | 106 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978126.1 | 1e-104 | transcription repressor MYB6 | ||||
TrEMBL | A0A3L6PVQ3 | 1e-106 | A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like | ||||
STRING | Si010822m | 1e-103 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |