PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04379.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 498aa    MW: 54231.1 Da    PI: 7.915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04379.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.63.6e-78914914374
                          GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgd.pmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                    +l+c+ +++ g++ +a+a+L+ ls  +s +gd ++qR++  f+eAL +r ++  ++l+ +l+ +   +  +   +++ + 
  Zmw_sc04379.1.g00010.1.sm.mk  91 IILQCVACLDMGNAVAASAALQYLSSVVSFAGDvALQRVVLAFAEALGRRAMQLLPGLAWSLQLKVLLPPPTPAYINSAQW 171
                                   689*****************************559************************9998776665555555555555 PP

                          GRAS  84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                                    f  ++P+++++  +aN+aI ea++ e+rvH++D++  ++ QW+aL++ +a+R++gpp lR+T v++    ++  l++ + 
  Zmw_sc04379.1.g00010.1.sm.mk 172 sFAMLFPLIRVAATAANNAIKEATAAERRVHVVDLGGANPNQWLALIRLFAARSRGPPFLRLTIVNE----DQSFLSQAAG 248
                                   5******************************************************************....99******** PP

                          GRAS 164 rLakfAeelgvpfefnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrll.........................d 215
                                    L++ A +l+vpf fn++  + +r++  ++ +L v +  +Eal++ + lq hrl                           
  Zmw_sc04379.1.g00010.1.sm.mk 249 VLTQEAVRLHVPFVFNPVqdHIDRFTPASVAALGVAQgrDEALVITSTLQFHRLIadkvtedlpaesrnkkrknvdtttaT 329
                                   *****************8666677777799999999999************************************988644 PP

                          GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                                    s++++ + d++L+++ +l Pk++v++eq+a+hn++ + +r+ +a++yy +lf  lea  + +  +r +vE++ll++e +n
  Zmw_sc04379.1.g00010.1.sm.mk 330 TSHEIT-KADALLRVLCDLTPKLMVLTEQDANHNDQVLSNRVRNAIDYYEVLFRDLEAA-GGDPMTREFVEHMLLKEEMKN 408
                                   444444.59***********************************************999.7888***************** PP

                          GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSa 372
                                   +++cega rrerhe+le W  r++ aGF+ +++s++a k++ +l ++ ++dg ++       ++g+l+l+ +++++++vSa
  Zmw_sc04379.1.g00010.1.sm.mk 409 IISCEGALRRERHEKLEYWFPRMKVAGFELAAVSDDAFKDVASLAHQLSGDGIKWTlgahkIDKGCLLLYSRNKSIFAVSA 489
                                   ****************************************************99987766567****************** PP

                          GRAS 373 Wr 374
                                   W+
  Zmw_sc04379.1.g00010.1.sm.mk 490 WQ 491
                                   *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.59662466IPR005202Transcription factor GRAS
PfamPF035141.2E-7591491IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSSNQSRGNG KAVVAKEEDA EQEIWLVRKK VHHQGGGPSC AGEESSSLSA PAQPAANQGA  60
KAPVEAVPVP DANVPGPQPH GGNLSIFFYN IILQCVACLD MGNAVAASAA LQYLSSVVSF  120
AGDVALQRVV LAFAEALGRR AMQLLPGLAW SLQLKVLLPP PTPAYINSAQ WSFAMLFPLI  180
RVAATAANNA IKEATAAERR VHVVDLGGAN PNQWLALIRL FAARSRGPPF LRLTIVNEDQ  240
SFLSQAAGVL TQEAVRLHVP FVFNPVQDHI DRFTPASVAA LGVAQGRDEA LVITSTLQFH  300
RLIADKVTED LPAESRNKKR KNVDTTTATT SHEITKADAL LRVLCDLTPK LMVLTEQDAN  360
HNDQVLSNRV RNAIDYYEVL FRDLEAAGGD PMTREFVEHM LLKEEMKNII SCEGALRRER  420
HEKLEYWFPR MKVAGFELAA VSDDAFKDVA SLAHQLSGDG IKWTLGAHKI DKGCLLLYSR  480
NKSIFAVSAW QPAKKTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-289449224379Protein SCARECROW
5b3h_D3e-289449224379Protein SCARECROW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303827.11e-116scarecrow-like protein 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330