PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc04365.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 447aa MW: 47189.5 Da PI: 8.5737 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.7 | 2.5e-32 | 142 | 197 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+ev++ Zmw_sc04365.1.g00030.1.am.mk 142 GVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEVDD 197 699*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.3E-29 | 143 | 195 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 144 | 195 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-30 | 144 | 195 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.893 | 145 | 194 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.19E-18 | 291 | 359 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-29 | 292 | 361 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-27 | 301 | 357 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 447 aa Download sequence Send to blast |
MGKSPRKMKK EEEGGVASRW DMAAASSART DNNRRTDQAS PAAAAAIFSL ERRRREEDEA 60 RGGGSMDLSG AQGELPIPMH APASPYASGG SAGGRVLQQL HRERGNNKGN EESPVRLPPS 120 PPAASEDRGS GKKRAAGGGG SGVKYRECLK NHAAAMGGNA TDGCGEFMPS GEEGSLEALK 180 CSACGCHRNF HRKEVDDDDE DLNADVCAGH GHFAGRRLLA TAMPPHLKSG GAGGGLLVTA 240 DQYGVGAYAA MRAVPPPPPL HHHHHQFVNA MPLRSVHTSE ESDGMDGGAG ARGSSSSLLS 300 KKRFRTKFTA EQKARMLDFA ERVGWRLQKL EDGMVHAFCQ EIGVKRRVLK VWMHNNKHSL 360 ATKRLEAPPG MASAPAPPPP MPMVPPPPMQ MVPPPPPALP SSPQPGPSDG ACVVTFGMTV 420 HCIDLDASSM LNPQLLSVPP LLCSPAV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 300 | 359 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 50 | 55 | ERRRRE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179853.1 | 1e-111 | zinc-finger homeodomain protein 4-like isoform X1 | ||||
Swissprot | Q53N87 | 5e-82 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A453HGH9 | 1e-109 | A0A453HGH9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_F3750ABFD.1 | 1e-110 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |