PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04343.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 234aa MW: 26905.8 Da PI: 9.8101

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04343.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.9	4.8e-54	78	212	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 +ppGfrFhPtdeelv++yL+kkv++ +++l +vik+vd+yk+ePwdL++ ++e++e yfFs++dkky+tg+r+n Zmw_sc04343.1.g00050.1.am.mk 78 VPPGFRFHPTDEELVDYYLRKKVASGRIDL-NVIKDVDLYKIEPWDLQEkcrlggPGEEEQNEFYFFSHKDKKYPTGTRTN 157 69**************************.99**********95355544223366699************* PP NAM 76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 rat+ g+Wkatg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle Zmw_sc04343.1.g00050.1.am.mk 158 RATAVGFWKATGRDKPIYTNkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 212 **************9856777**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-56	67	230	IPR003441	NAC domain
PROSITE profile	PS51005	54.363	78	231	IPR003441	NAC domain
Pfam	PF02365	4.3E-28	79	211	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSSDGKLLST RYHKRCRMEV ISACVTTAND HACLLRVLLF VRRPLSHAYL QMQLQPAGGS 60 LGSTGMSSTQ AQAHQQLVPP GFRFHPTDEE LVDYYLRKKV ASGRIDLNVI KDVDLYKIEP 120 WDLQEKCRLG GPGEEEQNEF YFFSHKDKKY PTGTRTNRAT AVGFWKATGR DKPIYTNKQR 180 QLVGMRKTLV YYKGRAPNGH KSDWIMHEYR LETNENGPPQ ASHMLLHVFF PFIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-47	65	211	2	140	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964278.1	1e-107	NAC domain-containing protein 105
Swissprot	Q9SL41	8e-80	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A0K1TPX3	1e-107	A0A0K1TPX3_PANVG; Secondary wall NAC master switch
STRING	Pavir.J26987.1.p	1e-108	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2594	37	91

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]