PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04342.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 477aa MW: 52439.2 Da PI: 5.5097

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04342.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.8e-12	274	332	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C........TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as.....kapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++l+P+ ++Ka+iL +++ Y+k+L+ Zmw_sc04342.1.g00060.1.sm.mk 274 KNHVMSERRRREKLNEMFLILKSLVPTiHKglisdELLVVQVDKASILAETIAYLKQLE 332 5899*********************777999888999****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.2E-17	2	88	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	6.94E-15	263	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.243	271	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.70E-14	274	336	No hit	No description
Pfam	PF00010	4.0E-9	275	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-15	275	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-15	277	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MQRSDQLREL YETLLSGGRD HRAARPVAAL SPEDLGDTEW YYVVCMTYAF RPGQGLPGRS 60 FTCNEHVWLC NAHLADSKTF PRALLAKVRE DPDLVRLVTE SFWERQLPAC TEEPCSRPPA 120 NGTGDADITT VIEDLDHNAM ETMITNRGQE FGAVGILSSA SLEHAANEID ELYSLCDELG 180 VDDWIMEGPF EVPCSPKAVA PGPGDTDDAG NVAMPVDRMT SFMAWRGPDS SGAAVPVIGE 240 PQKLLKKVVA GGAWENSSGA GGNSTRSTQE CGIKNHVMSE RRRREKLNEM FLILKSLVPT 300 IHKGLISDEL LVVQVDKASI LAETIAYLKQ LERRVEELES TSKDEHMTQP SETRPSGRHS 360 NGGVEKRVSG SKRKKASELS DDTERGHHWV RSKDGTSNVT VTVTDKDVLL EVHCQWEVLL 420 VTRVFDAMKT LHLDVLSVQA STQDGFMGLK IRAQSTSSAA TVPRMISEAV RKAIGKK

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MQRSDQLREL YETLLSGGRD HRAARPVAAL SPEDLGDTEW YYVVCMTYAF RPGQGLPGRS  60
FTCNEHVWLC NAHLADSKTF PRALLAKVRE DPDLVRLVTE SFWERQLPAC TEEPCSRPPA  120
NGTGDADITT VIEDLDHNAM ETMITNRGQE FGAVGILSSA SLEHAANEID ELYSLCDELG  180
VDDWIMEGPF EVPCSPKAVA PGPGDTDDAG NVAMPVDRMT SFMAWRGPDS SGAAVPVIGE  240
PQKLLKKVVA GGAWENSSGA GGNSTRSTQE CGIKNHVMSE RRRREKLNEM FLILKSLVPT  300
IHKGLISDEL LVVQVDKASI LAETIAYLKQ LERRVEELES TSKDEHMTQP SETRPSGRHS  360
NGGVEKRVSG SKRKKASELS DDTERGHHWV RSKDGTSNVT VTVTDKDVLL EVHCQWEVLL  420
VTRVFDAMKT LHLDVLSVQA STQDGFMGLK IRAQSTSSAA TVPRMISEAV RKAIGKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	ERRRRE
2	280	285	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13027	1e-159	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A2T7CYI5	0.0	A0A2T7CYI5_9POAL; Uncharacterized protein
STRING	Si000845m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]