PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04334.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 111aa MW: 11707.4 Da PI: 10.2606 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.8 | 4.5e-31 | 59 | 109 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRr g+lKKA+ELSvLCdae+a+++fss+g+lyeys+ Zmw_sc04334.1.g00070.1.sm.mk 59 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEIALVVFSSRGRLYEYSN 109 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00350 | 0 | 53 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-31 | 53 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-27 | 54 | 110 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.41E-36 | 54 | 110 | No hit | No description |
SMART | SM00432 | 7.8E-35 | 54 | 110 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.857 | 55 | 111 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-26 | 60 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-31 | 73 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-31 | 88 | 109 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MEAAQSTDLM SAALTSVGLK QKDPLPSPGT GSVAAAASTA GAAEKAAAAG NKGKKVEIKR 60 IENTTNRQVT FCKRRSGLLK KAYELSVLCD AEIALVVFSS RGRLYEYSNN R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-20 | 54 | 108 | 4 | 58 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960599.1 | 2e-40 | MADS-box transcription factor 58 | ||||
Swissprot | Q2V0P1 | 5e-36 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | K3ZAE5 | 5e-41 | K3ZAE5_SETIT; Uncharacterized protein | ||||
STRING | Si023516m | 8e-42 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |