PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04318.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 83aa    MW: 9289.56 Da    PI: 10.2915
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04318.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-18741135
                            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Zmw_sc04318.1.g00040.1.sm.mkhc  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRFRTKGS 41
                                    ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.5E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-12547No hitNo description
CDDcd002022.34E-13640No hitNo description
PfamPF003208.8E-16741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-13741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.583740IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRFRTKG SLANYTPMHR RFDIVDDEPR  60
VSRLRLPASK PKGQKTESNH EES
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825662.13e-42GATA transcription factor 26-like isoform X1
RefseqXP_025825663.14e-42GATA transcription factor 26-like isoform X2
RefseqXP_025825664.14e-42GATA transcription factor 26-like isoform X3
SwissprotQ8W4H12e-28GAT26_ARATH; GATA transcription factor 26
TrEMBLK3Y9H15e-42K3Y9H1_SETIT; Uncharacterized protein
STRINGSi010863m9e-43(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464