PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04302.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 394aa    MW: 43509.4 Da    PI: 4.8398
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04302.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.9e-11143186955
                             AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Zmw_sc04302.1.g00020.1.sm.mkhc 143 HHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 186
                                     6679******988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.431171IPR001471AP2/ERF domain
SMARTSM003802.2E-43077IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-93472IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-93571IPR001471AP2/ERF domain
PROSITE profilePS5103214.71107194IPR001471AP2/ERF domain
PfamPF008471.3E-5143185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-14143194IPR001471AP2/ERF domain
SMARTSM003802.8E-19143200IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-14143196IPR016177DNA-binding domain
CDDcd000186.07E-20144196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVNFDTRLTS LFRLCCLCSV HGGGARFSLH SGWRRARAVY LGAYEDEEAA ARAHDLAALK  60
YWGPGTVLNF PLCSYDDELK EMEGQSREEY VGSVRRKSSG FSRGVSKYRG VARFSSCKLA  120
LSIGSPAELT NNLQFISLAL MMHHHNGRWE ARIGRVLGNK YLYLGTYATQ EEAAVAYDIA  180
AIEHRGLNAV TNFDISHYVT WHRRRRRRGL GEQDGLDAIE LPNDLTEHAR TTADLDETEV  240
AVAAAFLEAD HLQHQDHIAD SYTEQVPDDQ EMMLDQLLLL HSPRFEEIME QVSGAASATM  300
TESNASSSPS PSACTSSSAP SSLSQPSPKR QPEPSSSAAA RCGFPDDVQT YFECDDDGIG  360
FAFAEVDTFL FGDLGAYAAP MFQCDLDVFV SERT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207RRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.11e-110AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A368RM591e-108A0A368RM59_SETIT; Uncharacterized protein
STRINGSi013842m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678