PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04301.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 143aa MW: 16198.1 Da PI: 9.7954 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 134.2 | 1.6e-41 | 32 | 111 | 91 | 170 |
YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+s++ + ++ + e+ ++++ + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfg Zmw_sc04301.1.g00050.1.am.mkhc 32 SSSSKFQLPMMYSAENGHLQEHALATRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFG 110 4555666667777777777777789*****************************************************9 PP YABBY 170 l 170 l Zmw_sc04301.1.g00050.1.am.mkhc 111 L 111 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-39 | 29 | 111 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.43E-9 | 55 | 105 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.0E-5 | 59 | 105 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MWTLHQSTEN IRPQGIINGT SHDQFGHLEF GSSSSKFQLP MMYSAENGHL QEHALATRPP 60 EKRQRVPSAY NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHYPNIHFG LSSPGREVGK 120 KLVDETVAAV TTPDPTNKIQ GFY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804907.1 | 9e-63 | protein YABBY 6-like isoform X1 | ||||
Swissprot | Q2QM17 | 4e-49 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0A8Y151 | 8e-69 | A0A0A8Y151_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ca02862.1.p | 9e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |