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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Zmw_sc04296.1.g00050.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bZIP | ||||||||
| Protein Properties | Length: 415aa MW: 45083.3 Da PI: 10.5376 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 30.7 | 7e-10 | 255 | 313 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
kr++r NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ l++e+
Zmw_sc04296.1.g00050.1.am.mkhc 255 KRAKRILANRQSAARSKERKIKYTSELEKKVQTLQTEATTLSAQLTLLQRDTTGLTAEN 313
9********************************************99998877777665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00338 | 1.4E-15 | 251 | 315 | IPR004827 | Basic-leucine zipper domain |
| PROSITE profile | PS50217 | 10.955 | 253 | 316 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF00170 | 1.6E-8 | 255 | 309 | IPR004827 | Basic-leucine zipper domain |
| Gene3D | G3DSA:1.20.5.170 | 3.9E-11 | 255 | 309 | No hit | No description |
| SuperFamily | SSF57959 | 6.4E-11 | 255 | 307 | No hit | No description |
| CDD | cd14703 | 1.78E-21 | 256 | 305 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 415 aa Download sequence Send to blast |
MVHMSSTERV RHRQAVARTP RPPRSRSADW TNAARLSSQS NDPLAPCLGR VLRFPHLRSP 60 TSSPFLARST PNSHAPAPPR GPRPTDMDRR FPLPAAPAPS GSRGHHRRAH SETFLRFPDA 120 DLLLDPDGDF SFSDLDFPCL SDDSPAVSDP TPQPPPAQPQ QQAAPSQAAA RPPRDVHARS 180 LSLDAAFFEG LALQGGGGGS SSGGGGKGGH KRSGSMDGVS SPFEGESALS SGMPDYAKKA 240 MPAERIAELA LIDPKRAKRI LANRQSAARS KERKIKYTSE LEKKVQTLQT EATTLSAQLT 300 LLQRDTTGLT AENRELKLRL QSMEEQAKLR DALNEALREE VQRLKIAAGQ AANMNGNRFN 360 GRLQQQIPSY FPQQQQMSYI GGYQAQNRNP SHHQSPSNGG QSLSGQSLND SMDFI |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269|PubMed:11432846, ECO:0000269|PubMed:12124400, ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315, ECO:0000269|PubMed:17947581, ECO:0000269|PubMed:19820165, ECO:0000269|PubMed:20547563}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269|PubMed:15108305}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002441871.1 | 1e-163 | transcription factor VIP1 | ||||
| Refseq | XP_003578876.1 | 1e-163 | transcription factor VIP1 | ||||
| Swissprot | Q9MA75 | 2e-71 | VIP1_ARATH; Transcription factor VIP1 | ||||
| TrEMBL | A0A0E0BPD2 | 1e-163 | A0A0E0BPD2_9ORYZ; Uncharacterized protein | ||||
| TrEMBL | A0A0E0J737 | 1e-163 | A0A0E0J737_ORYNI; Uncharacterized protein | ||||
| STRING | OGLUM12G04480.2 | 1e-164 | (Oryza glumipatula) | ||||
| STRING | ONIVA12G03450.1 | 1e-164 | (Oryza nivara) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1925 | 38 | 92 |
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